Gene: Zm00001eb321590
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb321590
- Transcript Identifier Zm00001eb321590_T001
- Gene Type Coding gene
- Location 7 : 155753712-155759894 : negative
Gene Family Information
- ID HOM05D005147
- #Genes/#Species 146/96
- Phylogenetic origin
- ID ORTHO05D006132
- #Genes/#Species 147/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Zm00001eb321590_T001
- pid Zm00001eb321590_P001
- uniprot A0A1D6LFG8
- uniprot A0A317Y2U5
- uniprot A0A3L6FCC1
- V4_identifier Zm00001d021509
- V4_identifier Zm00001d021510
Descriptions
- Description Zm00001e138352
- Description RNA binding (RRM/RBD/RNP motifs) family protein
- Description Helicase protein with RING/U-box domain
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0000184 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | AT5G16260 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT5G16260 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004386 | IEA | GOA Database | helicase activity | |
| GO:0017172 | IEA | GOA Database | cysteine dioxygenase activity | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0016702 | IEA | GOA Database | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G16260 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G16260 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G16260 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012474 | Frigida-like |
| IPR000504 | RNA recognition motif domain |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR034393 | TatSF1-like |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR034392 | TatSF1-like, RNA recognition motif 1 |
| IPR035979 | RNA-binding domain superfamily |
| IPR001650 | Helicase, C-terminal |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |