Gene: Zm00001eb196230

General Information

Structural Information

  • Species Zea mays
  • Gene Identifier Zm00001eb196230
  • Transcript Identifier Zm00001eb196230_T002
  • Gene Type Coding gene
  • Location 4 : 192020204-192029810 : negative

Gene Family Information

  • ID HOM05D005147
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Zm00001eb196230_T002
  • pid Zm00001eb196230_P002
  • uniprot C0P5X4
  • uniprot A0A1D6QH58
  • uniprot K7UM41
  • uniprot A0A1D6QH59
  • uniprot B4FUI9
  • uniprot A0A3L6EXT7
  • entrez 100273316
  • refseq XP_008676811.1
  • refseq NP_001141229.1
  • refseq NM_001147757.1
  • refseq XM_008678589.1
  • V4_identifier Zm00001d052439

Descriptions

  • Description Zm00001e024070
  • Description RNA binding (RRM/RBD/RNP motifs) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
GOA DatabasemRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000184
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay AT5G16260
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G16260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G16260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005686
IBA
GOA DatabaseU2 snRNP
GO:0005684
IBA
GOA DatabaseU2-type spliceosomal complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G16260
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G16260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035445 GYF-like domain superfamily
IPR035979 RNA-binding domain superfamily
IPR034392 TatSF1-like, RNA recognition motif 1
IPR025640 GYF domain 2
IPR034393 TatSF1-like
Mapman id Description
35.1 not assigned.annotated