Gene: FAN17G2636
General Information
Structural Information
- Species Fragaria x ananassa
- Gene Identifier FAN17G2636
- Transcript Identifier FAN17G2636.1
- Gene Type Coding gene
- Location Fvb4-2 : 260934-261795 : positive
Gene Family Information
- ID HOM05D005147
- #Genes/#Species 146/96
- Phylogenetic origin
- ID ORTHO05D006132
- #Genes/#Species 147/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- id augustus_masked-Fvb4-2-processed-gene-2.12.v1.0.a1
- pacid 50530644
Descriptions
- Description PF00076//PF00759 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) // Glycosyl hydrolase family 9 (Glyco_hydro_9)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005975 | IEA | InterPro | carbohydrate metabolic process | |
| GO:0000184 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | AT5G16260 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT5G16260 |
| GO:0000398 | ISO | PLAZA Homology (enrichment) | mRNA splicing, via spliceosome | HOM05D005147 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004553 | IEA | InterPro | hydrolase activity, hydrolyzing O-glycosyl compounds | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G16260 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G16260 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G16260 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001701 | Glycoside hydrolase family 9 |
| IPR008928 | Six-hairpin glycosidase superfamily |
| IPR012341 | Six-hairpin glycosidase-like superfamily |
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR000504 | RNA recognition motif domain |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |