Gene: Lj5g0011670

General Information

Structural Information

  • Species Lotus japonicus
  • Gene Identifier Lj5g0011670
  • Transcript Identifier Lj5g0011670.1
  • Gene Type Coding gene
  • Location chr5 : 17973272-17980330 : positive

Gene Family Information

  • ID HOM05D005147
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Lj5g0011670.Lj1.0v1
  • pacid 44924278

Descriptions

  • Description K13093 - HIV Tat-specific factor 1 (HTATSF1)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000184
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay AT5G16260
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G16260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G16260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G16260
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G16260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR034393 TatSF1-like
IPR000504 RNA recognition motif domain
IPR035445 GYF-like domain superfamily
IPR034392 TatSF1-like, RNA recognition motif 1
IPR025640 GYF domain 2
Mapman id Description
35.1 not assigned.annotated