Gene: Glyma.20G218800

General Information

Structural Information

  • Species Glycine max
  • Gene Identifier Glyma.20G218800
  • Transcript Identifier Glyma.20G218800.2
  • Gene Type Coding gene
  • Location Gm20 : 45393277-45401493 : negative

Gene Family Information

  • ID HOM05D005147
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • id Glyma.20G218800.Wm82.a4.v1
  • pacid 41090610
  • synonym Glyma20g36110

Descriptions

  • Description PTHR15608//PTHR15608:SF0 - SPLICING FACTOR U2AF-ASSOCIATED PROTEIN 2 // HIV TAT-SPECIFIC FACTOR 1
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000184
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay AT5G16260
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G16260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G16260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G16260
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G16260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
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InterPro Description
IPR034392 TatSF1-like, RNA recognition motif 1
IPR003954 RNA recognition motif domain, eukaryote
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
IPR034393 TatSF1-like
Mapman id Description
35.1 not assigned.annotated