Gene: Solyc11g008700.2
General Information
Structural Information
- Species Solanum lycopersicum
- Gene Identifier Solyc11g008700.2
- Transcript Identifier Solyc11g008700.2.1
- Gene Type Coding gene
- Location SL4.0ch11 : 2906752-2916271 : negative
Gene Family Information
- ID HOM05D005147
- #Genes/#Species 146/96
- Phylogenetic origin
- ID ORTHO05D006132
- #Genes/#Species 147/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- tid Solyc11g008700.2.1
- uniprot A0A3Q7IQI5
- gene_id Solyc11g008700
Descriptions
- Description splicing factor U2AF-associated protein 2 (AHRD V3.3 *** A0A2I4FMJ6_9ROSI)
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000398 | IEA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0000398 | IEA | InterPro | mRNA splicing, via spliceosome | |
| GO:0000184 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | AT5G16260 |
| GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT5G16260 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003676 | IEA | GOA Database | nucleic acid binding | |
| GO:0003676 | IEA | InterPro | nucleic acid binding | |
| GO:0003723 | IBA IEA | GOA Database | RNA binding | |
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G16260 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005684 | IBA | GOA Database | U2-type spliceosomal complex | |
| GO:0005686 | IBA | GOA Database | U2 snRNP | |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G16260 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G16260 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| IPR034392 | TatSF1-like, RNA recognition motif 1 |
| IPR034393 | TatSF1-like |
| IPR000504 | RNA recognition motif domain |
| IPR003954 | RNA recognition motif domain, eukaryote |
| IPR025640 | GYF domain 2 |
| IPR035979 | RNA-binding domain superfamily |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |