Gene: SGA_v2.0_scaffold62G21485
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold62G21485
- Transcript Identifier SGA_v2.0_scaffold62T21485
- Gene Type Coding gene
- Location scaffold62 : 1109718-1128870 : positive
Gene Family Information
- ID HOM05D005147
- #Genes/#Species 146/96
- Phylogenetic origin
- ID ORTHO05D006132
- #Genes/#Species 147/96
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- product Splicing factor U2AF-associated protein, putative
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0007062 | IEA | InterPro | sister chromatid cohesion | |
GO:0000184 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | AT5G16260 |
GO:0009910 | ISO | PLAZA Integrative Orthology | negative regulation of flower development | AT5G16260 |
GO:0000398 | ISO | PLAZA Homology (enrichment) | mRNA splicing, via spliceosome | HOM05D005147 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005515 | IEA | InterPro | protein binding | |
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT5G16260 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0008278 | IEA | InterPro | cohesin complex | |
GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G16260 |
GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT5G16260 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
IPR035445 | GYF-like domain superfamily |
IPR006910 | Rad21/Rec8-like protein, N-terminal |
IPR035979 | RNA-binding domain superfamily |
IPR039781 | Rad21/Rec8-like protein |
IPR000504 | RNA recognition motif domain |
IPR025640 | GYF domain 2 |
IPR003954 | RNA recognition motif domain, eukaryote |
Mapman id | Description |
---|---|
13.3.4.1.3 | Cell cycle organisation.mitosis and meiosis.sister chromatid separation.cohesin regulator complex.mitotic-specific Kleisin-type component SCC1 |