Gene: Sopen11g004480

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g004480
  • Transcript Identifier Sopen11g004480.1
  • Gene Type Coding gene
  • Location Spenn-ch11 : 2968235-2977765 : negative

Gene Family Information

  • ID HOM05D005147
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g004480.1

Descriptions

  • Description Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay. | EARLY FLOWERING 9 (ELF9) | FUNCTIONS IN: mRNA binding, RNA binding | INVOLVED IN: negative regulation of flower development, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Nucleotide-binding, alpha-beta plait , GYF
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000184
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay AT5G16260
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G16260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G16260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G16260
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G16260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025640 GYF domain 2
IPR034392 TatSF1-like, RNA recognition motif 1
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 RNA-binding domain superfamily
IPR000504 RNA recognition motif domain
IPR034393 TatSF1-like
Mapman id Description
35.1 not assigned.annotated