Gene: AT5G16260

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G16260
  • Transcript Identifier AT5G16260.1
  • Gene Type Coding gene
  • Location Chr5 : 5311363-5315496 : positive

Gene Family Information

  • ID HOM05D005147
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G16260.1
  • symbol ELF9
  • full_name EARLY FLOWERING 9
  • uniprot Q9LF02

Descriptions

  • Description RNA binding (RRM/RBD/RNP motifs) family protein
  • Computational description EARLY FLOWERING 9 (ELF9); FUNCTIONS IN: mRNA binding, RNA binding; INVOLVED IN: negative regulation of flower development, nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), GYF (InterPro:IPR003169); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
Gene OntologymRNA splicing, via spliceosome
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000184
IMP
Gene Ontologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay1
GO:0009910
IMP
Gene Ontologynegative regulation of flower development1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IDA
Gene OntologymRNA binding1
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding2
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IDA
ISM
Gene Ontologynucleus1
GO:0005686
IBA
Gene OntologyU2 snRNP2
GO:0005684
IBA
Gene OntologyU2-type spliceosomal complex2
GO:0005829
IDA
GOA Databasecytosol

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
IPR025640 GYF domain 2
IPR034392 TatSF1-like, RNA recognition motif 1
IPR035979 RNA-binding domain superfamily
IPR035445 GYF-like domain superfamily
IPR034393 TatSF1-like
Mapman id Description
35.1 not assigned.annotated