Gene: Cc09_g04140

General Information

Structural Information

  • Species Coffea canephora
  • Gene Identifier Cc09_g04140
  • Transcript Identifier Cc09_g04140.1
  • Gene Type Coding gene
  • Location chr9 : 3562559-3569119 : negative

Gene Family Information

  • ID HOM05D005147
  • #Genes/#Species 146/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • UniProtKB O43719
  • UniProtKB B9HYG5
  • UniProtKB Q5RB63
  • UniProtKB Q8BGC0
  • UniProtKB E6NU39
  • UniProtKB B9RH81
  • id GSCOCG00017462001

Descriptions

  • Description RNA binding (RRM/RBD/RNP motifs) family protein
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome
GO:0000184
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay AT5G16260
GO:0009910
ISO
PLAZA Integrative Orthologynegative regulation of flower development AT5G16260

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G16260

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G16260
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT5G16260

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025640 GYF domain 2
IPR034392 TatSF1-like, RNA recognition motif 1
IPR035445 GYF-like domain superfamily
IPR000504 RNA recognition motif domain
IPR034393 TatSF1-like
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Mapman id Description
35.1 not assigned.annotated