Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 1.7e-191 672.5 344 100.0
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 1.8e-169 599.4 343 89.8
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 7.8e-165 583.9 343 87.5
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 5.6e-147 524.6 343 78.4
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 8.1e-146 520.8 346 77.2
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 4.0e-145 518.5 343 79.3
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 9.0e-145 517.3 343 76.7
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 1.5e-144 516.5 343 76.7
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 3.4e-144 515.4 343 77.8
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 1.7e-143 513.1 343 77.0
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 1.7e-143 513.1 349 75.6
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 5.1e-140 501.5 337 76.6
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 9.6e-131 470.7 344 71.5
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 6.9e-129 464.5 334 73.1
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 7.6e-128 461.1 334 72.2
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 3.8e-127 458.8 334 71.9
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 4.9e-127 458.4 334 71.6
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 1.1e-126 457.2 343 70.0
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 2.5e-126 456.1 334 71.0
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 3.2e-126 455.7 334 71.0
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 3.2e-126 455.7 333 70.3
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 3.2e-126 455.7 338 72.2
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 4.2e-126 455.3 349 69.1
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 3.5e-125 452.2 339 71.4
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 1.3e-124 450.3 344 68.3
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 1.8e-124 449.9 334 69.2
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.1e-123 447.2 332 70.2
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 1.1e-123 447.2 333 68.8
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.9e-123 446.4 334 69.8
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 7.4e-123 444.5 340 68.8
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 7.4e-123 444.5 345 67.2
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 6.2e-122 441.4 333 70.0
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 8.2e-122 441.0 340 68.2
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 1.2e-120 437.2 330 68.8
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 3.4e-120 435.6 337 67.7
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 3.4e-120 435.6 341 67.4
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 3.4e-120 435.6 339 68.1
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 8.4e-119 431.0 335 67.5
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 8.4e-119 431.0 339 67.0
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 1.1e-118 430.6 337 66.5
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 1.4e-118 430.3 343 67.1
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 1.9e-118 429.9 335 66.3
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 2.5e-118 429.5 333 67.9
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.5e-118 429.5 333 66.7
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 3.2e-118 429.1 331 68.3
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.2e-118 428.7 337 67.4
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 7.2e-118 427.9 347 66.9
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 9.3e-118 427.6 337 67.1
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 1.2e-117 427.2 335 66.0
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 1.6e-117 426.8 333 67.3
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 3.0e-116 422.5 345 66.4
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 3.0e-116 422.5 338 64.8
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 5.1e-116 421.8 343 66.5
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 1.5e-115 420.2 333 66.7
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 3.3e-115 419.1 333 64.0
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 4.3e-115 418.7 330 66.1
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 9.7e-115 417.5 334 65.6
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 1.3e-114 417.2 339 65.5
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 3.7e-114 415.6 333 65.8
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 3.7e-114 415.6 337 64.1
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 4.8e-114 415.2 343 63.6
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 8.2e-114 414.5 344 64.2
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 1.1e-113 414.1 314 70.1
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 5.3e-113 411.8 343 63.6
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 9.0e-113 411.0 333 65.8
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 1.2e-112 410.6 333 65.2
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 7.7e-112 407.9 333 64.3
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 2.9e-111 406.0 343 61.5
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.9e-111 406.0 304 67.8
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.4e-110 403.7 337 62.9
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 5.5e-110 401.7 345 62.9
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 7.2e-110 401.4 335 63.0
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 7.2e-110 401.4 303 70.0
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 1.6e-109 400.2 338 61.8
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 4.6e-109 398.7 337 62.3
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 7.9e-109 397.9 341 61.3
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.0e-108 397.5 331 64.7
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 4.3e-107 392.1 289 70.2
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 3.1e-105 386.0 340 60.6
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 3.1e-105 386.0 340 60.6
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 2.6e-104 382.9 327 62.4
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 4.5e-104 382.1 393 56.7
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 2.5e-102 376.3 334 59.9
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 1.7e-98 363.6 315 63.5
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 2.2e-95 353.2 292 66.4
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 3.8e-95 352.4 335 58.8
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 2.5e-94 349.7 367 55.9
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 4.2e-94 349.0 219 84.0
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 7.2e-94 348.2 338 56.8
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.3e-92 343.2 347 56.8
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.0e-91 340.1 275 65.1
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 5.7e-91 338.6 280 66.1
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.8e-90 336.3 221 74.7
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 4.8e-90 335.5 337 52.8
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 1.2e-88 330.9 339 56.9
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 1.6e-88 330.5 343 53.4
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 3.5e-88 329.3 220 75.5
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 5.0e-87 325.5 226 71.7
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 8.0e-85 318.2 269 66.2
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 1.1e-81 307.8 340 52.1
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 2.2e-79 300.1 334 50.6
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 8.5e-79 298.1 245 63.7
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.3e-76 290.0 273 61.5
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 3.1e-73 279.6 276 57.2
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 1.6e-72 277.3 234 66.2
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.7e-71 273.9 333 47.7
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 6.8e-68 261.9 279 55.2
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 4.9e-66 255.8 396 44.7
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 1.1e-62 244.6 185 65.9
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 3.6e-61 239.6 209 61.7
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 2.0e-59 233.8 248 53.6
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 4.4e-59 232.6 283 50.2
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 2.7e-56 223.4 210 59.5
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 1.7e-55 220.7 235 50.6
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 9.8e-51 204.9 214 55.6
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 2.2e-42 177.2 107 76.6
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.6e-40 171.0 246 43.5
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 6.0e-40 169.1 107 75.7
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 3.0e-39 166.8 311 36.3
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 3.1e-36 156.8 279 39.8
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.6e-35 153.7 95 70.5
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 3.4e-35 153.3 95 71.6
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 7.6e-35 152.1 280 38.2
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.5e-30 137.1 122 63.1
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.3e-29 134.8 72 87.5
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 3.4e-27 126.7 75 76.0
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.4e-25 120.6 81 66.7
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 1.7e-23 114.4 83 69.9
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 3.4e-19 100.1 63 69.8
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 5.8e-19 99.4 75 61.3
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 7.1e-17 92.4 78 57.7
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 9.3e-17 92.0 81 56.8
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.2e-16 91.7 83 56.6
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 7.9e-16 89.0 83 55.4
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 2.3e-15 87.4 81 54.3
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 5.1e-15 86.3 73 57.5
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 2.5e-14 84.0 78 52.6
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 9.6e-14 82.0 72 55.6
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 2.1e-13 80.9 65 58.5
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 3.7e-13 80.1 121 43.8
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 6.2e-13 79.3 81 49.4
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 2.3e-07 60.8 82 41.5
SMO172G0032 Selaginella moellendorffii HOM05D002097 ORTHO05D002248 2.3e-07 60.8 257 26.1
CANSAT01G0666 Cannabis sativa HOM05D001563 ORTHO05D001956 3.0e-07 60.5 234 28.2
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 6.7e-07 59.3 100 37.0
FvH4_3g04890 Fragaria vesca HOM05D001563 ORTHO05D001956 8.7e-07 58.9 222 23.4
PGR142G0147 Punica granatum HOM05D005264 ORTHO05D005428 1.5e-06 58.2 69 42.0
Atru.chr10.1931 Acer truncatum HOM05D001563 ORTHO05D001956 1.9e-06 57.8 223 26.0
FAN16G1505 Fragaria x ananassa HOM05D001563 ORTHO05D001956 1.9e-06 57.8 222 23.0
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 2.5e-06 57.4 68 45.6
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 2.5e-06 57.4 67 46.3
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 3.3e-06 57.0 80 33.8
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 3.3e-06 57.0 68 44.1
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 3.3e-06 57.0 67 46.3
CANSAT25G1049 Cannabis sativa HOM05D002097 ORTHO05D002248 4.3e-06 56.6 105 32.4
Gohir.D07G112100 Gossypium hirsutum HOM05D005264 ORTHO05D005428 4.3e-06 56.6 67 47.8
RcHm_v2.0_Chr6g0278711 Rosa chinensis HOM05D002097 ORTHO05D002248 4.3e-06 56.6 87 32.2
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 5.7e-06 56.2 90 38.9
AUR62015185 Chenopodium quinoa HOM05D005264 ORTHO05D005428 5.7e-06 56.2 99 33.3
AUR62017649 Chenopodium quinoa HOM05D005264 ORTHO05D005428 5.7e-06 56.2 99 33.3
AUR62044527 Chenopodium quinoa HOM05D005264 ORTHO05D005428 5.7e-06 56.2 99 33.3
Ciclev10031922m.g Citrus clementina HOM05D005264 ORTHO05D005428 5.7e-06 56.2 67 46.3
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 5.7e-06 56.2 67 46.3
FAN11G2001 Fragaria x ananassa HOM05D001563 ORTHO05D001956 5.7e-06 56.2 222 23.9
FAN21G2391 Fragaria x ananassa HOM05D001563 ORTHO05D001956 5.7e-06 56.2 222 22.1
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 5.7e-06 56.2 62 51.6
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 5.7e-06 56.2 62 51.6
THA.LOC104826521 Tarenaya hassleriana HOM05D005264 ORTHO05D005428 5.7e-06 56.2 67 44.8
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 5.7e-06 56.2 67 41.8
FvH4_2g15540 Fragaria vesca HOM05D002097 ORTHO05D002248 7.4e-06 55.8 80 33.8
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 7.4e-06 55.8 80 33.8
Gorai.002G167000 Gossypium raimondii HOM05D005264 ORTHO05D005428 7.4e-06 55.8 77 41.6
Phvul.011G032100 Phaseolus vulgaris HOM05D005264 ORTHO05D005428 7.4e-06 55.8 67 44.8
Cpa.g.sc353.4 Carica papaya HOM05D001563 ORTHO05D001956 9.6e-06 55.5 235 26.4


User provided reference genes

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