Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 2.5e-300 1034.6 522 100.0
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 1.1e-250 869.8 523 86.0
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 7.0e-250 867.1 525 84.2
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 2.7e-249 865.1 526 83.7
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 1.7e-243 845.9 523 84.3
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 8.3e-243 843.6 523 84.1
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 3.1e-242 841.6 533 81.4
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 8.9e-237 823.5 522 82.0
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 1.2e-233 813.1 522 79.1
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 4.6e-225 784.6 527 78.4
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 1.5e-220 769.6 507 76.5
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 1.2e-196 690.3 464 78.4
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 8.7e-176 620.9 507 62.5
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 1.3e-174 617.1 528 60.0
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 8.2e-174 614.4 508 62.0
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 9.0e-173 610.9 525 61.0
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.5e-172 610.1 533 60.2
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 4.5e-172 608.6 512 61.9
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 5.9e-172 608.2 509 60.5
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 2.2e-171 606.3 522 60.9
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 3.8e-171 605.5 514 60.3
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 3.2e-170 602.4 527 59.2
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 7.9e-169 597.8 523 59.5
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 9.7e-167 590.9 534 58.4
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 3.7e-166 589.0 517 59.2
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 1.7e-163 580.1 516 59.1
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 6.5e-163 578.2 515 59.2
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 8.5e-163 577.8 509 59.7
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 1.1e-162 577.4 509 59.9
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 1.4e-162 577.0 515 59.4
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 3.2e-162 575.9 508 57.9
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 3.2e-162 575.9 511 59.7
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 5.5e-162 575.1 511 57.3
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 9.4e-162 574.3 541 57.5
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 2.1e-161 573.2 509 59.1
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 4.7e-161 572.0 507 59.4
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 6.1e-161 571.6 515 57.9
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 6.1e-161 571.6 508 59.8
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.8e-160 570.1 508 59.4
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 6.7e-160 568.2 509 58.5
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 4.4e-159 565.5 518 57.7
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 4.4e-159 565.5 610 52.5
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 5.7e-159 565.1 511 58.5
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 3.7e-158 562.4 505 56.6
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 6.3e-158 561.6 507 58.0
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 1.8e-157 560.1 534 56.0
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 2.4e-157 559.7 582 52.6
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 2.4e-157 559.7 523 56.4
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 2.4e-157 559.7 524 56.3
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 7.0e-157 558.1 526 55.7
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 9.1e-157 557.8 517 56.9
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 9.1e-157 557.8 515 57.7
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 2.0e-156 556.6 516 59.3
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 2.0e-156 556.6 507 57.0
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 3.5e-156 555.8 479 61.0
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.5e-156 555.8 519 56.1
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 2.2e-155 553.1 521 54.3
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.9e-155 552.7 504 57.3
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 5.0e-155 552.0 515 56.7
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 6.5e-155 551.6 524 55.9
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 1.4e-154 550.4 533 56.3
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 3.2e-154 549.3 324 86.1
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 5.5e-154 548.5 507 57.6
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 2.7e-153 546.2 514 55.1
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 3.6e-153 545.8 512 55.3
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 3.6e-153 545.8 525 55.8
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 5.2e-152 542.0 519 57.2
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 2.0e-151 540.0 512 55.7
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 3.3e-151 539.3 487 58.5
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 9.7e-151 537.7 511 57.9
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 1.3e-150 537.3 504 56.2
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 6.3e-150 535.0 516 55.6
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 2.4e-149 533.1 505 54.9
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 4.5e-148 528.9 483 56.5
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 1.1e-146 524.2 474 59.5
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 1.6e-140 503.8 467 56.5
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 1.9e-138 496.9 629 47.5
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 1.9e-138 496.9 505 53.9
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.5e-138 496.5 500 53.6
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.4e-136 490.7 504 51.8
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 6.8e-136 488.4 597 47.4
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 5.0e-131 472.2 447 55.9
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 5.5e-130 468.8 518 49.8
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 1.2e-129 467.6 543 50.8
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 8.0e-129 464.9 508 50.4
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.5e-124 449.1 514 49.8
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 7.8e-124 448.4 418 57.4
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 2.9e-123 446.4 525 48.0
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 2.3e-120 436.8 335 67.5
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 1.1e-117 427.9 413 55.7
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 4.7e-113 412.5 438 53.9
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 3.1e-112 409.8 399 55.6
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.2e-110 403.7 325 62.8
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.7e-108 396.7 431 52.2
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 6.0e-108 395.6 341 61.3
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 8.6e-107 391.7 513 43.7
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.2e-105 387.9 331 60.7
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 5.2e-104 382.5 576 42.4
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 2.0e-103 380.6 463 47.9
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 4.4e-103 379.4 393 53.9
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 1.7e-99 367.5 284 63.0
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 2.3e-99 367.1 429 48.3
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 3.9e-99 366.3 406 50.2
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.5e-87 327.8 508 39.4
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 8.4e-86 322.0 657 34.9
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 3.2e-85 320.1 216 71.3
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.0e-83 315.1 221 67.0
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.9e-82 310.8 215 67.9
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 6.0e-76 289.3 241 59.3
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 2.5e-66 257.3 565 34.0
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.1e-65 254.2 180 68.9
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 8.7e-59 232.3 224 55.4
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 3.3e-58 230.3 576 30.9
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 9.0e-56 222.2 214 55.6
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 5.1e-51 206.5 159 62.3
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 2.6e-47 194.1 170 58.8
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 8.8e-43 179.1 156 57.1
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 2.0e-39 167.9 186 47.3
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.1e-36 157.9 179 49.7
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 8.0e-36 156.0 107 66.4
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.2e-33 147.9 117 65.0
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 2.4e-32 144.4 107 63.6
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 1.2e-31 142.1 276 37.0
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 2.6e-31 141.0 413 31.5
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.2e-30 137.9 94 66.0
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 2.9e-30 137.5 94 67.0
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 3.8e-30 137.1 162 46.3
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 4.2e-29 133.7 84 83.3
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 5.5e-29 133.3 82 82.9
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 9.4e-29 132.5 406 29.1
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 9.4e-29 132.5 289 32.5
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 1.0e-27 129.0 84 81.0
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 2.0e-26 124.8 82 78.0
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 5.7e-26 123.2 82 78.0
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 1.3e-25 122.1 82 76.8
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 2.2e-25 121.3 87 74.7
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 9.1e-24 115.9 86 72.1
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 1.6e-23 115.2 79 75.9
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 4.5e-23 113.6 81 70.4
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 1.3e-22 112.1 72 69.4
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 1.7e-22 111.7 69 79.7
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 3.8e-22 110.5 72 68.1
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.6e-20 105.1 78 64.1
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 1.2e-18 99.0 59 69.5
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.7e-15 87.8 75 52.0
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.9e-13 81.6 295 27.5
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.9e-13 81.6 295 27.5
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 3.3e-13 80.9 61 60.7
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 1.3e-06 58.9 82 43.9
HPP92_016158 Vanilla planifolia HOM05D002097 ORTHO05D002248 8.6e-06 56.2 80 33.8


User provided reference genes

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