Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 1.7e-241 839.0 434 100.0
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 2.7e-146 522.7 419 64.9
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 4.5e-125 452.2 427 54.8
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 3.7e-119 432.6 419 53.9
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 6.2e-119 431.8 419 53.7
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 8.4e-116 421.4 442 50.9
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.4e-115 420.6 422 53.1
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 2.5e-115 419.9 419 53.0
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 3.2e-115 419.5 422 52.1
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 9.3e-115 417.9 438 51.8
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 1.6e-114 417.2 421 52.7
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 3.5e-114 416.0 440 51.1
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 6.1e-114 415.2 387 54.5
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 7.9e-114 414.8 422 51.4
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 3.9e-113 412.5 427 50.6
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 5.1e-113 412.1 419 52.0
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 5.1e-113 412.1 427 49.6
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 6.7e-113 411.8 435 49.7
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 1.9e-112 410.2 382 55.8
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 1.9e-112 410.2 413 51.3
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 1.9e-112 410.2 430 49.5
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 2.5e-112 409.8 421 52.3
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.3e-111 407.5 418 51.0
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 1.3e-111 407.5 429 50.8
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 2.2e-111 406.8 415 51.1
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.2e-111 406.8 438 50.2
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 3.7e-111 406.0 422 50.0
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 4.8e-111 405.6 428 50.5
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 4.8e-111 405.6 412 51.7
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 8.2e-111 404.8 390 53.1
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.1e-110 404.4 429 50.6
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 1.8e-110 403.7 419 49.4
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 2.4e-110 403.3 444 50.2
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 3.1e-110 402.9 434 49.3
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 4.1e-110 402.5 436 49.5
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 4.1e-110 402.5 416 51.2
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 5.3e-110 402.1 443 49.2
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 9.0e-110 401.4 391 52.7
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 1.2e-109 401.0 445 49.9
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.2e-109 401.0 434 49.1
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 1.2e-109 401.0 426 48.8
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 1.5e-109 400.6 415 50.1
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 2.0e-109 400.2 427 50.4
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 2.0e-109 400.2 373 54.7
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 2.6e-109 399.8 427 49.2
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 4.5e-109 399.1 434 49.1
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 4.5e-109 399.1 428 49.8
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 5.9e-109 398.7 426 49.5
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 7.7e-109 398.3 414 49.8
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 2.2e-108 396.7 428 48.6
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 2.9e-108 396.4 375 54.1
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 2.9e-108 396.4 422 49.5
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.1e-107 394.4 421 48.7
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.4e-107 394.0 373 57.4
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 1.4e-107 394.0 435 47.6
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 1.4e-107 394.0 418 49.5
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.9e-107 393.7 421 48.7
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 9.4e-107 391.3 423 49.4
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 1.6e-106 390.6 422 50.0
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 3.6e-106 389.4 427 49.2
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 7.9e-106 388.3 439 47.8
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.0e-105 387.9 440 47.7
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 1.0e-105 387.9 438 48.6
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 1.0e-105 387.9 432 48.4
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 1.1e-104 384.4 436 47.9
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 3.3e-104 382.9 425 49.4
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 5.7e-104 382.1 440 47.7
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 7.4e-104 381.7 429 48.3
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 9.7e-104 381.3 433 48.0
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 3.7e-103 379.4 431 49.7
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 6.3e-103 378.6 445 47.6
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 1.5e-101 374.0 423 48.7
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 7.7e-101 371.7 424 47.6
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 7.7e-101 371.7 424 47.6
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 5.0e-100 369.0 408 47.5
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 1.1e-99 367.9 422 47.4
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 1.2e-98 364.4 406 49.3
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 1.2e-98 364.4 327 56.6
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 2.1e-98 363.6 473 44.0
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.5e-96 357.5 423 47.5
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 2.8e-95 353.2 429 45.7
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.0e-93 347.1 384 47.4
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 7.7e-93 345.1 512 40.4
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 2.2e-92 343.6 402 47.3
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.9e-92 343.2 317 56.5
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 6.5e-92 342.0 343 53.4
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 3.6e-90 336.3 323 54.8
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 6.7e-89 332.0 374 47.9
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 1.5e-88 330.9 370 48.9
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 2.0e-88 330.5 284 57.0
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 5.7e-88 328.9 427 43.6
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 4.1e-86 322.8 341 49.3
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 9.1e-86 321.6 364 47.3
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 1.6e-85 320.9 324 52.5
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.6e-85 320.9 436 43.8
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 9.8e-80 301.6 287 53.3
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 9.8e-80 301.6 500 39.2
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.4e-78 297.0 414 44.4
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 5.9e-77 292.4 360 46.1
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 1.1e-75 288.1 350 46.6
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 7.5e-72 275.4 221 58.4
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 7.0e-70 268.9 273 52.4
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.7e-68 264.2 216 58.3
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 1.9e-67 260.8 307 46.6
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 2.5e-67 260.4 414 37.9
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 3.3e-67 260.0 215 57.2
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 4.2e-67 259.6 373 41.6
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 6.1e-66 255.8 307 47.2
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 9.8e-64 248.4 243 53.1
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 9.8e-64 248.4 241 53.5
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 5.0e-60 236.1 475 33.3
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.5e-59 234.6 488 34.0
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 1.7e-52 211.1 214 50.9
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 1.2e-45 188.3 180 51.7
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 1.1e-43 181.8 162 54.3
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 2.3e-41 174.1 418 33.0
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.6e-34 151.4 420 29.5
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.1e-33 148.7 114 64.0
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.4e-33 147.5 157 48.4
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.2e-32 145.2 107 63.6
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 5.6e-27 126.3 107 55.1
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 9.9e-24 115.5 268 34.7
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.2e-23 114.4 76 65.8
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.2e-21 108.6 91 51.6
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 1.6e-21 108.2 91 52.7
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 3.9e-20 103.6 72 63.9
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 5.1e-20 103.2 74 63.5
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 2.2e-15 87.8 61 59.0
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.3e-12 77.8 74 48.6
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 8.7e-12 75.9 118 40.7
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 2.5e-11 74.3 75 50.7
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 3.3e-11 73.9 89 46.1
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 3.3e-11 73.9 81 46.9
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 4.3e-11 73.6 78 47.4
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 9.6e-11 72.4 81 46.9
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 8.1e-10 69.3 89 43.8
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 1.4e-09 68.6 81 39.5
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 2.4e-09 67.8 92 38.0
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 3.1e-09 67.4 72 48.6
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 1.5e-08 65.1 63 49.2
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 2.0e-08 64.7 78 42.3
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 5.8e-08 63.2 111 32.4
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 1.3e-07 62.0 83 39.8
FvH4_2g15540 Fragaria vesca HOM05D002097 ORTHO05D002248 2.2e-07 61.2 79 34.2
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 2.2e-07 61.2 79 34.2
RcHm_v2.0_Chr6g0278711 Rosa chinensis HOM05D002097 ORTHO05D002248 2.2e-07 61.2 79 34.2
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 8.4e-07 59.3 95 34.7
RcHm_v2.0_Chr6g0278641 Rosa chinensis HOM05D002097 ORTHO05D002248 1.4e-06 58.5 79 34.2
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 2.5e-06 57.8 63 44.4
Cc11_g02330 Coffea canephora HOM05D005264 ORTHO05D005428 2.5e-06 57.8 96 36.5
Medtr2g013130 Medicago truncatula HOM05D001563 ORTHO05D001956 2.5e-06 57.8 223 23.8
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 3.2e-06 57.4 97 33.0
AUR62013011 Chenopodium quinoa HOM05D002097 ORTHO05D002248 4.2e-06 57.0 79 35.4
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 4.2e-06 57.0 96 33.3
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 5.5e-06 56.6 96 35.4
Actinidia20520 Actinidia chinensis HOM05D002097 ORTHO05D002248 7.1e-06 56.2 79 34.2
Ah.01g023150 Amaranthus hybridus HOM05D002097 ORTHO05D002248 7.1e-06 56.2 79 35.4
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 7.1e-06 56.2 96 36.5
HPP92_004408 Vanilla planifolia HOM05D002097 ORTHO05D002248 7.1e-06 56.2 79 32.9
AUR62010021 Chenopodium quinoa HOM05D002097 ORTHO05D002248 9.3e-06 55.8 79 35.4
Zm00001eb222690 Zea mays HOM05D002097 ORTHO05D002248 9.3e-06 55.8 79 38.0


User provided reference genes

Program Settings