Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.6e-172 609.4 316 100.0
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 9.7e-162 573.5 323 92.9
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.5e-151 539.7 314 86.3
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 2.1e-132 476.1 320 76.2
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 6.1e-132 474.6 334 72.8
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 8.0e-132 474.2 313 74.1
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 1.4e-131 473.4 317 74.1
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 5.2e-131 471.5 323 73.7
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.2e-130 470.3 321 74.1
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.5e-130 469.9 314 75.5
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 4.4e-130 468.4 321 73.8
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 9.8e-130 467.2 329 70.5
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.7e-129 466.5 321 73.5
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 2.4e-128 462.6 328 71.0
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 2.4e-128 462.6 328 69.8
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 3.1e-128 462.2 328 70.4
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 4.1e-128 461.8 314 72.9
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 5.4e-128 461.5 334 70.1
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 9.1e-128 460.7 314 73.9
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 9.1e-128 460.7 314 73.6
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 2.7e-127 459.1 330 70.9
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 3.5e-127 458.8 330 69.4
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 4.5e-127 458.4 329 69.9
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 3.8e-126 455.3 324 71.0
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.5e-125 453.4 328 69.5
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 1.9e-125 453.0 326 70.2
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 2.5e-125 452.6 333 67.6
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 3.3e-125 452.2 314 71.7
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 1.2e-124 450.3 309 71.5
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 2.1e-124 449.5 333 67.9
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 4.7e-124 448.4 328 70.1
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 6.1e-124 448.0 314 69.7
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 6.1e-124 448.0 333 67.9
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 8.0e-124 447.6 328 68.9
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.2e-123 444.9 313 70.0
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 8.9e-123 444.1 328 68.3
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 1.2e-122 443.7 335 66.3
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.4e-122 442.2 328 68.0
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 9.8e-122 440.7 328 67.7
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 1.3e-121 440.3 348 68.7
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 2.2e-121 439.5 326 68.4
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 2.2e-121 439.5 328 68.3
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 4.9e-121 438.3 316 67.1
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 1.4e-120 436.8 313 68.7
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 1.8e-120 436.4 328 66.8
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 5.4e-120 434.9 314 69.4
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 4.5e-119 431.8 323 68.4
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 1.7e-118 429.9 324 66.4
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 1.7e-118 429.9 314 67.5
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 3.9e-118 428.7 318 67.9
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 5.0e-118 428.3 328 65.2
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 1.2e-116 423.7 320 66.9
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 2.1e-116 422.9 325 64.6
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 4.7e-116 421.8 329 66.0
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 8.0e-116 421.0 317 67.5
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 4.0e-115 418.7 316 67.1
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 5.2e-115 418.3 325 64.0
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 5.2e-115 418.3 333 65.8
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 1.2e-114 417.2 314 67.5
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 2.0e-114 416.4 328 65.5
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 2.6e-114 416.0 314 65.0
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 4.4e-114 415.2 319 64.6
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 5.8e-114 414.8 282 72.0
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 7.5e-114 414.5 268 73.1
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 9.8e-114 414.1 325 63.7
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 1.3e-113 413.7 325 63.4
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 4.9e-113 411.8 320 64.4
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 1.4e-112 410.2 328 63.1
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 7.0e-112 407.9 297 71.7
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 7.0e-112 407.9 376 58.8
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 8.6e-110 401.0 287 70.4
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.1e-109 400.6 326 62.3
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 1.9e-109 399.8 326 62.0
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 2.5e-109 399.4 326 62.3
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 4.3e-109 398.7 330 61.5
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.3e-109 398.7 328 63.4
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 5.6e-109 398.3 326 61.0
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 2.1e-108 396.4 331 60.7
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 3.6e-108 395.6 331 59.8
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 3.6e-108 395.6 326 60.7
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 8.0e-108 394.4 326 61.0
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 1.2e-106 390.6 296 65.9
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 9.8e-106 387.5 320 61.6
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 9.8e-106 387.5 320 61.6
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 8.3e-105 384.4 319 60.5
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 1.6e-100 370.2 314 60.5
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 4.7e-100 368.6 313 63.3
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 1.5e-98 363.6 275 68.0
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.7e-97 360.1 314 56.1
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.1e-96 357.5 214 77.1
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.1e-95 353.2 275 64.4
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.1e-94 348.6 342 56.7
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 1.6e-92 343.6 271 65.3
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.4e-91 340.5 219 74.0
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 4.0e-91 339.0 213 75.1
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 1.3e-89 334.0 323 54.8
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 2.9e-89 332.8 317 57.1
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 2.3e-86 323.2 259 59.8
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 5.1e-86 322.0 245 67.8
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.5e-82 310.5 241 62.7
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 4.9e-81 305.4 254 59.4
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 7.8e-79 298.1 259 62.5
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 1.2e-74 284.3 263 57.0
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 4.5e-74 282.3 680 31.9
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 7.6e-74 281.6 300 50.7
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 3.9e-70 269.2 281 53.0
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 5.1e-70 268.9 390 45.4
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 1.9e-69 266.9 178 70.2
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 1.2e-63 247.7 213 61.5
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 6.0e-63 245.4 191 66.5
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 8.7e-62 241.5 244 52.9
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 1.3e-60 237.7 256 48.8
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 3.7e-60 236.1 207 61.8
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 2.4e-59 233.4 232 51.7
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 4.5e-58 229.2 159 71.1
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 3.3e-45 186.4 242 43.0
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 1.6e-39 167.5 275 37.8
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 4.7e-39 166.0 105 70.5
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 7.9e-39 165.2 105 71.4
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 8.8e-38 161.8 259 38.2
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.1e-35 154.8 284 34.5
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.4e-35 154.5 114 67.5
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.0e-34 150.6 155 50.3
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 3.5e-34 149.8 95 68.4
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 1.3e-28 131.3 70 82.9
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 2.4e-27 127.1 85 70.6
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 2.6e-26 123.6 70 78.6
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.7e-23 112.8 78 64.1
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 4.1e-19 99.8 82 61.0
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 7.0e-19 99.0 76 61.8
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 7.0e-19 99.0 63 66.7
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 1.0e-17 95.1 82 58.5
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.3e-17 94.7 75 53.3
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 2.2e-17 94.0 80 56.2
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 6.5e-17 92.4 80 56.2
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 2.5e-16 90.5 76 56.6
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 4.2e-16 89.7 70 61.4
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 9.4e-16 88.6 84 53.6
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 2.3e-14 84.0 79 53.2
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 8.8e-14 82.0 64 59.4
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 7.0e-11 72.4 99 46.5
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 3.6e-07 60.1 126 30.2
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 4.7e-07 59.7 100 38.0
Zm00001eb320850 Zea mays HOM05D005264 ORTHO05D005428 1.4e-06 58.2 103 34.0
Lj3g0025490 Lotus japonicus HOM05D005264 ORTHO05D005428 1.8e-06 57.8 90 34.4
COL.COLO4_16614 Corchorus olitorius HOM05D005264 ORTHO05D005428 2.3e-06 57.4 105 33.3
Hund27680 Selenicereus undatus HOM05D005264 ORTHO05D005428 4.0e-06 56.6 91 33.0
Hund27681 Selenicereus undatus HOM05D005264 ORTHO05D005428 4.0e-06 56.6 91 33.0
BcaB04g17259 Brassica carinata HOM05D005264 ORTHO05D005428 5.2e-06 56.2 96 36.5
Gohir.D01G138900 Gossypium hirsutum HOM05D005264 ORTHO05D005428 5.2e-06 56.2 95 33.7
Lalb_Chr10g0095091 Lupinus albus HOM05D005264 ORTHO05D005428 5.2e-06 56.2 90 36.7
Os07g0296200 Oryza sativa ssp. japonica HOM05D005264 ORTHO05D005428 5.2e-06 56.2 96 33.3
CANSAT54G0937 Cannabis sativa HOM05D005264 ORTHO05D005428 6.8e-06 55.8 90 35.6
Cpa.g.sc393.4 Carica papaya HOM05D005264 ORTHO05D005428 6.8e-06 55.8 96 32.3
Lalb_Chr04g0258911 Lupinus albus HOM05D005264 ORTHO05D005428 6.8e-06 55.8 91 35.2
Sp1g37140 Schrenkiella parvula HOM05D005264 ORTHO05D005428 6.8e-06 55.8 96 36.5
arahy.Tifrunner.gnm1.ann1.4UU5Y7 Arachis hypogaea HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 35.6
arahy.Tifrunner.gnm1.ann1.6SGT2N Arachis hypogaea HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 35.6
BcaC08g43212 Brassica carinata HOM05D005264 ORTHO05D005428 8.9e-06 55.5 97 36.1
DCAR_002562 Daucus carota HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 35.6
Glyma.12G028800 Glycine max HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 35.6
Mapoly0154s0004 Marchantia polymorpha HOM05D005264 ORTHO05D005428 8.9e-06 55.5 91 34.1
Medtr4g074230 Medicago truncatula HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 34.4
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 32.2
Sc08g0002840 Simmondsia chinensis HOM05D001563 ORTHO05D001956 8.9e-06 55.5 230 26.5
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 8.9e-06 55.5 90 35.6
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 8.9e-06 55.5 67 40.3


User provided reference genes

Program Settings