Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.4e-298 1028.9 524 100.0
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 5.0e-147 525.4 515 53.2
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 8.3e-142 508.1 419 64.9
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.1e-138 497.7 544 49.6
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.1e-138 497.7 513 52.0
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 5.6e-138 495.4 505 52.3
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 6.1e-137 491.9 506 51.0
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.0e-136 491.1 543 48.4
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 2.3e-136 490.0 526 50.6
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 4.0e-136 489.2 504 50.8
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 8.9e-136 488.0 531 50.8
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 1.5e-135 487.3 516 49.6
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 1.5e-135 487.3 518 51.9
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 2.0e-135 486.9 506 50.4
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 2.6e-135 486.5 509 50.9
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 3.4e-135 486.1 524 50.4
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 5.7e-135 485.3 521 48.8
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 9.8e-135 484.6 525 48.0
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.7e-134 483.8 509 49.5
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 2.2e-134 483.4 512 49.8
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 3.7e-134 482.6 507 50.7
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 3.2e-133 479.6 532 47.4
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 4.1e-133 479.2 517 49.5
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 4.1e-133 479.2 515 49.5
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 5.4e-133 478.8 539 47.7
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 5.4e-133 478.8 525 48.8
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.2e-132 477.6 517 49.1
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 1.2e-132 477.6 524 50.8
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 1.2e-132 477.6 524 48.9
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 1.6e-132 477.2 532 47.9
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 2.7e-132 476.5 521 48.9
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 7.8e-132 474.9 531 49.3
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 7.8e-132 474.9 519 49.1
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 3.0e-131 473.0 542 47.8
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 3.9e-131 472.6 512 48.4
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 6.6e-131 471.9 525 49.1
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 6.6e-131 471.9 512 49.2
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 8.6e-131 471.5 510 49.4
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 1.5e-130 470.7 523 48.8
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 5.6e-130 468.8 535 47.3
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 7.3e-130 468.4 512 47.9
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 2.1e-129 466.8 510 48.4
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 3.6e-129 466.1 511 49.1
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 4.7e-129 465.7 515 48.0
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.1e-128 464.5 515 48.3
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.4e-128 464.2 515 48.3
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 1.4e-128 464.2 530 47.7
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 1.8e-128 463.8 508 49.0
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 1.8e-128 463.8 525 48.6
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 3.1e-128 463.0 522 48.1
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 6.8e-128 461.8 480 51.5
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.2e-127 461.1 526 48.1
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 3.4e-127 459.5 512 47.5
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 3.4e-127 459.5 534 47.4
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 7.5e-127 458.4 516 48.4
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 4.9e-126 455.7 522 47.1
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 6.4e-126 455.3 522 48.7
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 1.1e-125 454.5 587 44.5
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 1.9e-125 453.8 528 47.0
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 9.2e-125 451.4 522 49.0
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 1.6e-124 450.7 507 46.2
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 7.8e-124 448.4 534 47.6
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 1.0e-123 448.0 532 46.6
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 1.0e-123 448.0 525 48.0
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 1.3e-123 447.6 517 48.0
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 1.3e-123 447.6 526 47.7
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 2.3e-123 446.8 532 46.6
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 3.0e-123 446.4 514 47.3
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 3.9e-123 446.0 522 48.3
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 8.6e-123 444.9 623 42.9
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 5.6e-122 442.2 537 46.2
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 7.3e-122 441.8 518 47.3
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 3.6e-121 439.5 489 47.9
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 5.2e-120 435.6 499 46.9
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.2e-119 434.5 518 48.5
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 1.2e-119 434.5 500 46.6
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 9.9e-119 431.4 477 50.3
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 4.1e-117 426.0 501 46.1
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 1.1e-114 417.9 658 38.9
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 1.9e-114 417.2 468 48.1
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.3e-114 416.4 515 45.6
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 2.0e-111 407.1 606 41.3
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 4.1e-109 399.4 510 44.9
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 1.3e-107 394.4 619 40.1
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 3.0e-107 393.3 508 43.9
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.1e-107 392.5 514 43.6
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 8.7e-107 391.7 458 46.9
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 6.9e-104 382.1 535 43.0
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 9.0e-104 381.7 422 49.1
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.8e-102 376.3 531 42.7
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 5.6e-98 362.5 467 45.0
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 4.8e-97 359.4 324 55.9
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 4.8e-97 359.4 396 49.7
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 3.4e-95 353.2 311 57.2
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 9.9e-95 351.7 314 56.1
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 9.3e-93 345.1 428 45.6
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 1.1e-90 338.2 386 48.2
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 5.6e-90 335.9 337 52.8
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 6.9e-88 328.9 282 56.7
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 9.0e-88 328.6 418 45.5
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 5.8e-87 325.9 580 36.6
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 4.2e-85 319.7 324 54.3
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 1.2e-84 318.2 458 41.3
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 4.6e-84 316.2 573 36.5
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 5.6e-82 309.3 286 55.9
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 2.1e-81 307.4 403 43.7
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.5e-74 284.6 221 58.4
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.4e-69 268.1 214 58.9
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 3.2e-69 266.9 575 33.2
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.1e-68 264.2 213 57.3
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 7.4e-66 255.8 241 53.1
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 1.3e-65 255.0 243 54.7
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 5.7e-50 203.0 214 48.1
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 6.3e-49 199.5 178 54.5
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 2.3e-43 181.0 159 53.5
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 7.5e-42 176.0 416 32.0
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.0e-35 155.6 157 49.7
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.0e-34 151.4 111 64.9
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.4e-32 145.2 412 29.4
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 2.4e-32 144.4 207 41.5
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 1.5e-29 135.2 196 39.3
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.6e-28 131.7 105 58.1
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 5.2e-27 126.7 185 40.0
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 8.9e-27 125.9 105 55.2
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 4.9e-25 120.2 73 72.6
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 3.5e-23 114.0 261 33.0
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 7.3e-21 106.3 72 68.1
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 9.5e-21 105.9 309 27.8
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.2e-20 105.5 95 47.4
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.6e-20 105.1 170 36.5
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 2.8e-20 104.4 95 47.4
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 4.0e-19 100.5 70 65.7
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 2.4e-16 91.3 61 63.9
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 6.2e-12 76.6 81 40.7
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.3e-11 74.7 78 42.3
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 1.2e-10 72.4 76 48.7
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.2e-10 72.4 81 49.4
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 2.6e-10 71.2 73 50.7
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 3.4e-10 70.9 79 46.8
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 9.8e-10 69.3 79 46.8
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 2.9e-09 67.8 81 46.9
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 3.7e-09 67.4 70 50.0
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 8.3e-09 66.2 91 36.3
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 1.4e-08 65.5 76 44.7
CBR_g21137 Chara braunii HOM05D005147 ORTHO05D006132 1.2e-07 62.4 183 31.1
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 1.6e-07 62.0 81 43.2
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 7.8e-07 59.7 55 49.1
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 3.0e-06 57.8 59 47.5
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 8.6e-06 56.2 79 30.4


User provided reference genes

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