Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 1.0e-276 956.1 478 100.0
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 1.7e-186 656.4 463 71.1
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 6.1e-184 647.9 477 66.9
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.4e-183 646.7 468 68.6
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 4.8e-181 638.3 495 64.2
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 7.0e-180 634.4 477 66.2
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 9.1e-180 634.0 473 68.1
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 1.6e-179 633.3 468 67.1
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 2.7e-179 632.5 490 65.3
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 3.5e-179 632.1 481 65.1
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 5.9e-179 631.3 468 66.9
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 1.1e-177 627.1 491 64.4
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 1.1e-177 627.1 501 63.7
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 4.2e-177 625.2 515 62.3
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 6.1e-176 621.3 516 61.6
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 6.1e-176 621.3 485 64.3
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 8.0e-176 620.9 485 63.9
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 1.8e-175 619.8 438 69.9
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 1.8e-175 619.8 486 65.2
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 5.2e-175 618.2 516 61.2
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 8.8e-175 617.5 518 61.4
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 1.2e-174 617.1 478 64.6
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 5.7e-174 614.8 486 64.4
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 1.3e-173 613.6 488 62.3
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 1.7e-173 613.2 498 61.8
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 1.1e-172 610.5 492 63.8
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 1.4e-172 610.1 509 61.5
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 1.4e-172 610.1 510 60.4
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 3.1e-172 609.0 484 63.4
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 4.1e-172 608.6 469 63.3
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 5.4e-172 608.2 483 64.0
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 9.1e-172 607.4 485 63.7
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 4.5e-171 605.1 507 60.6
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 7.7e-171 604.4 499 60.9
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 3.8e-170 602.1 472 64.8
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 5.0e-170 601.7 488 61.5
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 8.6e-170 600.9 484 62.6
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 2.5e-169 599.4 474 63.7
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 7.2e-169 597.8 523 59.7
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 6.1e-168 594.7 478 62.6
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 6.1e-168 594.7 531 57.8
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 1.0e-167 594.0 479 62.0
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.0e-167 594.0 477 63.7
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 1.4e-167 593.6 486 61.5
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 1.8e-167 593.2 487 62.2
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 4.0e-167 592.0 476 62.4
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 8.9e-167 590.9 472 64.2
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 1.2e-166 590.5 487 60.2
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.4e-166 589.0 482 61.4
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.7e-166 588.2 470 62.6
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 4.9e-165 585.1 451 64.7
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 6.4e-165 584.7 503 59.0
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 9.2e-164 580.9 474 61.4
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 1.2e-163 580.5 562 56.8
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 1.6e-163 580.1 491 59.1
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 4.6e-163 578.6 490 59.4
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 4.6e-163 578.6 469 61.4
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 1.7e-162 576.6 494 58.9
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 2.3e-162 576.2 505 57.4
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 2.5e-161 572.8 459 62.7
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 5.6e-161 571.6 506 57.3
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 7.3e-161 571.2 478 62.6
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 1.2e-160 570.5 463 64.4
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 8.0e-160 567.8 476 60.3
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 1.4e-159 567.0 498 57.6
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.4e-159 567.0 456 62.7
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 1.8e-159 566.6 571 56.2
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 2.3e-159 566.2 486 61.7
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 6.8e-159 564.7 504 56.7
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 1.3e-157 560.5 505 55.6
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 2.2e-157 559.7 521 54.3
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 2.4e-156 556.2 473 60.7
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.0e-154 548.5 467 60.4
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 1.5e-153 547.0 493 56.2
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 7.3e-153 544.7 493 56.0
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 7.3e-153 544.7 439 62.9
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 4.7e-152 542.0 592 50.2
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 1.2e-150 537.3 490 55.1
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 4.4e-142 508.8 492 54.9
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 4.9e-141 505.4 471 57.5
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.6e-139 498.8 488 56.1
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 6.0e-139 498.4 493 52.7
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 3.9e-138 495.7 405 63.0
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 6.6e-138 495.0 417 60.0
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.5e-137 493.8 516 49.6
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 2.4e-132 476.5 627 44.8
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 1.1e-129 467.6 329 71.1
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 6.2e-128 461.8 308 74.4
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.6e-126 456.4 389 62.0
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 5.6e-121 438.7 382 61.0
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 6.2e-120 435.3 343 67.1
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.8e-119 433.7 313 68.7
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 1.5e-118 430.6 284 75.7
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 5.8e-118 428.7 561 45.5
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 2.9e-117 426.4 430 53.7
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 1.4e-116 424.1 432 51.2
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 3.2e-116 422.9 419 53.7
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 1.3e-114 417.5 488 46.3
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 1.5e-113 414.1 320 64.7
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 4.0e-111 406.0 411 55.0
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 6.5e-109 398.7 360 56.9
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 1.1e-108 397.9 365 57.5
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 3.9e-106 389.4 357 57.4
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 3.9e-106 389.4 401 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 8.5e-101 371.7 462 44.6
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.2e-93 347.1 215 77.2
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.1e-92 344.7 221 74.7
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 4.2e-92 342.8 216 75.0
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 5.9e-86 322.4 240 66.7
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 7.7e-70 268.9 180 70.6
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 1.9e-68 264.2 259 61.0
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 4.2e-68 263.1 545 34.1
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 4.0e-66 256.5 558 31.9
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 9.8e-65 251.9 214 61.7
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 8.5e-61 238.8 244 54.5
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 8.3e-56 222.2 159 68.6
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 8.9e-50 202.2 241 47.3
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.1e-44 185.3 107 81.3
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 7.3e-44 182.6 527 30.7
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 2.9e-40 170.6 152 54.6
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 9.2e-39 165.6 107 71.0
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 7.8e-38 162.5 137 60.6
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 3.9e-37 160.2 156 49.4
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.1e-36 158.7 115 68.7
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 2.8e-35 154.1 390 31.5
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.1e-34 152.1 94 72.3
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 1.4e-34 151.8 94 73.4
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 6.8e-34 149.4 175 43.4
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.0e-33 147.9 259 35.1
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 4.3e-28 130.2 72 83.3
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 3.6e-27 127.1 72 80.6
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.3e-24 118.6 228 34.2
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.3e-24 118.6 228 34.2
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 9.2e-23 112.5 77 67.5
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 2.1e-22 111.3 81 64.2
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 5.1e-21 106.7 77 59.7
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 1.5e-20 105.1 78 64.1
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.9e-20 104.8 98 56.1
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 5.6e-20 103.2 62 71.0
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 4.7e-19 100.1 98 54.1
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 1.8e-18 98.2 81 59.3
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 5.2e-18 96.7 81 59.3
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 1.2e-17 95.5 78 59.0
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 1.5e-17 95.1 72 63.9
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 4.4e-17 93.6 73 61.6
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 5.8e-17 93.2 83 56.6
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 1.4e-15 88.6 65 63.1
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 4.8e-11 73.6 58 46.6
Lalb_Chr01g0000001 Lupinus albus HOM05D001563 ORTHO05D001956 1.1e-07 62.4 229 24.9
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 5.4e-07 60.1 80 32.5
CANSAT25G1049 Cannabis sativa HOM05D002097 ORTHO05D002248 1.2e-06 58.9 105 31.4
FvH4_2g15540 Fragaria vesca HOM05D002097 ORTHO05D002248 1.2e-06 58.9 80 32.5
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 1.2e-06 58.9 80 32.5
RcHm_v2.0_Chr6g0278711 Rosa chinensis HOM05D002097 ORTHO05D002248 1.2e-06 58.9 80 32.5
Glyma.20G107100 Glycine max HOM05D002097 ORTHO05D002248 2.1e-06 58.2 106 34.0
RcHm_v2.0_Chr6g0278641 Rosa chinensis HOM05D002097 ORTHO05D002248 2.1e-06 58.2 80 33.8
Rhsim11G0193000 Rhododendron simsii HOM05D002097 ORTHO05D002248 2.7e-06 57.8 102 30.4
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 3.5e-06 57.4 108 30.6
Medtr3g005670 Medicago truncatula HOM05D001563 ORTHO05D001956 3.5e-06 57.4 217 24.0
Psat1g004880 Pisum sativum HOM05D001563 ORTHO05D001956 3.5e-06 57.4 222 23.9
HPP92_004408 Vanilla planifolia HOM05D002097 ORTHO05D002248 3.5e-06 57.4 80 31.2
TPR.G25537 Trifolium pratense HOM05D001563 ORTHO05D001956 4.6e-06 57.0 217 24.0
CARHR245030 Cardamine hirsuta HOM05D001563 ORTHO05D001956 6.0e-06 56.6 228 25.4
Cpa.g.sc353.4 Carica papaya HOM05D001563 ORTHO05D001956 6.0e-06 56.6 231 27.3
Oeu007445.5 Olea europaea HOM05D001563 ORTHO05D001956 6.0e-06 56.6 232 27.2
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 6.0e-06 56.6 94 35.1
SMO172G0032 Selaginella moellendorffii HOM05D002097 ORTHO05D002248 6.0e-06 56.6 252 25.4
HPP92_016158 Vanilla planifolia HOM05D002097 ORTHO05D002248 6.0e-06 56.6 80 31.2
AUR62013011 Chenopodium quinoa HOM05D002097 ORTHO05D002248 7.9e-06 56.2 97 29.9
SEGI_35596 Sequoiadendron giganteum HOM05D001563 ORTHO05D001956 7.9e-06 56.2 236 24.6


User provided reference genes

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