Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc09_g00370 Coffea canephora HOM05D002341 ORTHO05D003165 4.2e-33 144.1 70 100.0
Thhalv10024184m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 1.6e-11 72.4 61 57.4
Cre01.g016050 Chlamydomonas reinhardtii HOM05D002341 ORTHO05D003165 2.0e-11 72.0 61 55.7
PRCOL_00001855 Prasinoderma coloniale HOM05D002341 ORTHO05D003165 3.5e-11 71.2 61 54.1
Atru.chr1.2928 Acer truncatum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Actinidia15757 Actinidia chinensis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Aa31LG3G3350 Aethionema arabicum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Ah.01g020550 Amaranthus hybridus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
ATR0800G142 Amborella trichopoda HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
AagrBONN_evm.TU.Sc2ySwM_362.189 Anthoceros agrestis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
AL2G41470 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
AL7G10650 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
AT1G80070 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
arahy.Tifrunner.gnm1.ann1.B7D93H Arachis hypogaea HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
arahy.Tifrunner.gnm1.ann1.DCJ864 Arachis hypogaea HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
MSTRG.4705 Avicennia marina HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
MSTRG.9422 Avicennia marina HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
EL10Ac9g21877 Beta vulgaris HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BcaB06g28420 Brassica carinata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BcaB06g28506 Brassica carinata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BcaC09g51361 Brassica carinata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BcaNung01746 Brassica carinata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
A01p11740 Brassica napus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
A04p23900 Brassica napus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
C01p13930 Brassica napus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
C04p60540 Brassica napus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BolC1t01360H Brassica oleracea HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BolC4t27552H Brassica oleracea HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BraA01t01116Z Brassica rapa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
BraA04t17913Z Brassica rapa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CANSAT56G2164 Cannabis sativa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Carub.0002s2745 Capsella rubella HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CAN.G147.16 Capsicum annuum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CARHR074430 Cardamine hirsuta HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Cfa001956 Carpinus fangiana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CiPaw.01G248600 Carya illinoinensis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CDE02G0999 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CDE09G0407 Ceratophyllum demersum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
AUR62011512 Chenopodium quinoa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
AUR62016331 Chenopodium quinoa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Ca_01053_v3 Cicer arietinum L. HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
ClCG09G002950 Citrullus lanatus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Ciclev10024683m.g Citrus clementina HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Cc00_g08660 Coffea canephora HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Cc01_g01870 Coffea canephora HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
COL.COLO4_11940 Corchorus olitorius HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
COL.COLO4_24410 Corchorus olitorius HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Haze_16566 Corylus avellana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
MELO3C023427.2 Cucumis melo HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
CsaV3_7G032320 Cucumis sativus L. HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
DCAR_022311 Daucus carota HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
DCAR_025515 Daucus carota HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Dinv30609 Davidia involucrata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Dinv38126 Davidia involucrata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Duzib160G0553 Durio zibethinus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Duzib235G1417 Durio zibethinus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
ECA246G5065 Erigeron canadensis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
ECA247G2936 Erigeron canadensis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Migut.D01080 Erythranthe guttata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Eucgr.F03879 Eucalyptus grandis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Eucgr.F03935 Eucalyptus grandis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Thhalv10017992m.g Eutrema salsugineum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
FvH4_6g29610 Fragaria vesca HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
FAN02G2239 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
FAN05G3465 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
FAN09G3038 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
FAN14G4930 Fragaria x ananassa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Glyma.13G366100 Glycine max HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Glyma.15G007100 Glycine max HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Gohir.A05G122851 Gossypium hirsutum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Gohir.A10G073101 Gossypium hirsutum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Gohir.D05G123700 Gossypium hirsutum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Gohir.D10G077825 Gossypium hirsutum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Gorai.009G127700 Gossypium raimondii HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Gorai.011G084400 Gossypium raimondii HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
HanXRQChr02g0033481 Helianthus annuus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
HanXRQChr04g0097891 Helianthus annuus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Hma1.2p1_0017F.1_g011180 Hydrangea macrophylla HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Lsat_1_v5_gn_1_34320 Lactuca sativa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Lj9C499G5 Lonicera japonica HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Lj3g0016754 Lotus japonicus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Lalb_Chr14g0373851 Lupinus albus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Lalb_Chr24g0395471 Lupinus albus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
MD00G1072300 Malus domestica HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
MD17G1212800 Malus domestica HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Manes.04G112400 Manihot esculenta HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Manes.11G057400 Manihot esculenta HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Mapoly0019s0008 Marchantia polymorpha HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Medtr2g103960 Medicago truncatula HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Medtr8g011150 Medicago truncatula HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
MCO02G483 Micromonas commoda HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Nn2g12097 Nelumbo nucifera HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Nn8g39518 Nelumbo nucifera HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Nitab4.5_0000366g0200 Nicotiana tabacum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Nitab4.5_0002890g0050 Nicotiana tabacum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Oeu005942.1 Olea europaea HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Oeu045135.1 Olea europaea HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
PSO017G1385 Papaver somniferum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
PSO170G3007 Papaver somniferum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Peaxi162Scf00089g00635 Petunia axillaris HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Peaxi162Scf01838g00019 Petunia axillaris HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Phvul.005G178600 Phaseolus vulgaris HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Pp3c24_20910 Physcomitrium patens HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Pp3c8_25090 Physcomitrium patens HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Psat5g302520 Pisum sativum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Potri.003G031900 Populus trichocarpa HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Prupe.3G088200 Prunus persica HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Prupe.7G079800 Prunus persica HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
PGR102G3099 Punica granatum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
QL05p031390 Quercus lobata HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Rhsim08G0212600 Rhododendron simsii HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
RcHm_v2.0_Chr2g0135211 Rosa chinensis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Sabra03G0018200 Salix brachista HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
SalBow6G3017 Salvia bowleyana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
SalBow6G5900 Salvia bowleyana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Sp5g35830 Schrenkiella parvula HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Sed0003553 Sechium edule HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Sed0021407 Sechium edule HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
SMO145G0262 Selaginella moellendorffii HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Hund00514 Selenicereus undatus HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
SEGI_03160 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
SEGI_15815 Sequoiadendron giganteum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Sc10g0008090 Simmondsia chinensis HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Solyc07g008880.3 Solanum lycopersicum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Sopen07g004810 Solanum pennellii HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
PGSC0003DMG400028736 Solanum tuberosum HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
SGA_v2.0_scaffold26G11346 Striga asiatica HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
THA.LOC104800410 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
THA.LOC104812513 Tarenaya hassleriana HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Thecc.06G025500 Theobroma cacao HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
TPR.G37161 Trifolium pratense HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
TWI75G1620 Tripterygium wilfordii HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
TAR383G0801 Trochodendron aralioides HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
TAR625G0212 Trochodendron aralioides HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
unitig_747.g21298 Utricularia gibba HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
vmacro19000 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
HPP92_003044 Vanilla planifolia HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
VMungo1080G1733 Vigna mungo HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
GSVIVG01017346001 Vitis vinifera HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Zm00001eb271550 Zea mays HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Zm00001eb375530 Zea mays HOM05D002341 ORTHO05D003165 4.5e-11 70.9 61 55.7
Aqoxy3G03781 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 5.9e-11 70.5 61 54.1
AT4G38780 Arabidopsis thaliana HOM05D002341 ORTHO05D003165 5.9e-11 70.5 61 54.1
CBR_g48660 Chara braunii HOM05D002341 ORTHO05D003165 5.9e-11 70.5 61 54.1
TPR.G24585 Trifolium pratense HOM05D002341 ORTHO05D003165 5.9e-11 70.5 61 54.1
BcaB02g09158 Brassica carinata HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 52.5
BcaC02g12021 Brassica carinata HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 54.1
A05p07330 Brassica napus HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 54.1
C04p08780 Brassica napus HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 54.1
BolC4t22470H Brassica oleracea HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 54.1
BraA05t19698Z Brassica rapa HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 54.1
Cfa023699 Carpinus fangiana HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 52.5
Medtr2g093510 Medicago truncatula HOM05D002341 ORTHO05D003165 7.7e-11 70.1 61 55.7
Aqoxy3G02657 Aquilegia oxysepala HOM05D002341 ORTHO05D003165 1.0e-10 69.7 61 57.4
Carub.0007s2659 Capsella rubella HOM05D002341 ORTHO05D003165 2.9e-10 68.2 60 51.7
FAN14G1989 Fragaria x ananassa HOM05D002341 ORTHO05D003165 3.8e-10 67.8 61 54.1
RcHm_v2.0_Chr2g0160631 Rosa chinensis HOM05D002341 ORTHO05D003165 3.8e-10 67.8 61 54.1
Haze_26409 Corylus avellana HOM05D002341 ORTHO05D003165 5.0e-10 67.4 61 49.2
AL7G40190 Arabidopsis lyrata HOM05D002341 ORTHO05D003165 8.5e-10 66.6 60 51.7
Lalb_Chr04g0249401 Lupinus albus HOM05D002341 ORTHO05D003165 1.1e-09 66.2 61 50.8
Nitab4.5_0007065g0030 Nicotiana tabacum HOM05D002341 ORTHO05D003165 1.1e-09 66.2 62 51.6
CARHR222120 Cardamine hirsuta HOM05D002341 ORTHO05D003165 1.9e-09 65.5 60 50.0
HanXRQChr16g0508801 Helianthus annuus HOM05D002341 ORTHO05D003165 7.2e-09 63.5 61 50.8
FAN05G4314 Fragaria x ananassa HOM05D002341 ORTHO05D003165 1.2e-08 62.8 61 49.2
SGA_v2.0_scaffold332G48966 Striga asiatica HOM05D002341 ORTHO05D003165 1.2e-08 62.8 57 52.6
vmacro07672 Vaccinium macrocarpon HOM05D002341 ORTHO05D003165 1.6e-08 62.4 61 49.2
BcaC05g27955 Brassica carinata HOM05D002341 ORTHO05D003165 2.7e-08 61.6 52 57.7
Zm00001eb337780 Zea mays HOM05D002341 ORTHO05D003165 7.5e-06 53.5 43 62.8


User provided reference genes

Program Settings