Gene: Medtr2g093510

General Information

Structural Information

  • Species Medicago truncatula
  • Gene Identifier Medtr2g093510
  • Transcript Identifier Medtr2g093510.1
  • Gene Type Coding gene
  • Location chr2 : 39873554-39877755 : negative

Gene Family Information

  • ID HOM05D002341
  • #Genes/#Species 290/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 31066581
  • id Medtr2g093510.JCVIMt4.0v1

Descriptions

  • Description pre-mRNA-processing-splicing factor
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000398
IEA
InterPromRNA splicing, via spliceosome

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0017070
IEA
InterProU6 snRNA binding
GO:0030623
IEA
InterProU5 snRNA binding
GO:0003924
IEA
InterProGTPase activity
GO:0005525
IEA
InterProGTP binding
GO:0003723
ISO
PLAZA Homology (enrichment)RNA binding HOM05D002341
GO:0005515
ISO
PLAZA Homology (enrichment)protein binding HOM05D002341
GO:0070122
ISO
PLAZA Homology (enrichment)isopeptidase activity HOM05D002341
GO:0008237
ISO
PLAZA Homology (enrichment)metallopeptidase activity HOM05D002341

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005681
IEA
InterProspliceosomal complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR027652 Pre-mRNA-processing-splicing factor 8
IPR012337 Ribonuclease H-like superfamily
IPR021983 PRP8 domain IV core
IPR019580 Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding
IPR019581 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding
IPR042516 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamily
IPR043172 Prp8 RNase domain IV, palm region
IPR001806 Small GTPase
Mapman id Description
16.2.1.4.4 RNA processing.pre-mRNA splicing.U2-type-intron-specific major spliceosome.U5 small nuclear ribonucleoprotein particle (snRNP).protein factor (PRPF8/SUS2)