Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 4.4e-133 478.0 252 100.0
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 1.0e-68 264.2 259 61.0
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 4.8e-47 192.2 259 44.0
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 1.4e-46 190.7 259 46.7
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 4.1e-46 189.1 270 45.2
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 4.1e-46 189.1 268 44.8
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 5.3e-46 188.7 259 44.4
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 9.1e-46 188.0 270 44.8
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.6e-45 187.2 259 43.6
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 7.7e-45 184.9 259 43.6
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 5.0e-44 182.2 259 42.5
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 6.5e-44 181.8 271 42.8
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 1.5e-43 180.6 268 42.9
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 4.2e-43 179.1 279 40.9
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 5.5e-43 178.7 272 44.1
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 9.4e-43 177.9 262 42.7
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 1.6e-42 177.2 273 44.0
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 1.6e-42 177.2 262 44.3
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 3.6e-42 176.0 259 41.3
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 6.1e-42 175.3 266 42.5
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 1.0e-41 174.5 271 42.1
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 1.0e-41 174.5 266 43.2
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 1.0e-41 174.5 273 41.0
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 1.8e-41 173.7 275 42.5
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.8e-41 173.7 266 42.5
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 1.8e-41 173.7 266 42.5
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 2.3e-41 173.3 268 42.9
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 2.3e-41 173.3 259 41.3
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 3.0e-41 172.9 273 41.8
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 4.0e-41 172.6 259 42.1
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 5.2e-41 172.2 273 42.1
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 5.2e-41 172.2 270 40.0
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 5.2e-41 172.2 259 42.9
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 8.8e-41 171.4 259 41.7
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 2.0e-40 170.2 279 40.5
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 2.0e-40 170.2 273 41.8
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.0e-40 170.2 271 40.6
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 2.0e-40 170.2 279 39.8
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 2.6e-40 169.9 262 42.0
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 4.4e-40 169.1 270 40.0
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 5.7e-40 168.7 270 41.1
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 5.7e-40 168.7 275 42.2
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 7.5e-40 168.3 273 40.3
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 1.7e-39 167.2 262 41.2
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 1.7e-39 167.2 271 41.7
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.2e-39 166.8 259 42.1
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 2.8e-39 166.4 259 41.3
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 6.3e-39 165.2 280 38.2
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.8e-38 163.7 184 48.9
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 1.8e-38 163.7 274 38.7
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 4.1e-38 162.5 259 39.4
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 4.1e-38 162.5 259 40.2
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 1.2e-37 161.0 278 39.2
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 1.6e-37 160.6 279 39.8
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 2.0e-37 160.2 306 38.2
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 2.0e-37 160.2 150 58.0
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 2.7e-37 159.8 278 39.6
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 7.7e-37 158.3 262 41.2
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 7.7e-37 158.3 268 41.0
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.0e-36 157.9 259 38.2
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 1.7e-36 157.1 274 39.4
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 1.7e-36 157.1 274 39.1
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 1.7e-36 157.1 274 39.1
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 2.9e-36 156.4 274 38.7
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 5.0e-36 155.6 274 40.5
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 1.5e-35 154.1 266 37.6
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.9e-35 153.7 147 55.1
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 2.5e-35 153.3 251 41.0
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 4.2e-35 152.5 276 38.0
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.2e-35 152.5 274 38.0
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 7.2e-35 151.8 267 39.7
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 9.5e-35 151.4 269 37.5
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.2e-34 151.0 147 53.1
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.6e-34 150.6 271 38.7
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 2.1e-34 150.2 271 37.6
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 2.1e-34 150.2 274 37.6
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.1e-34 150.2 274 38.0
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 2.8e-34 149.8 259 37.5
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 3.6e-34 149.4 271 38.4
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 3.6e-34 149.4 267 38.2
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 3.6e-34 149.4 270 37.0
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 4.7e-34 149.1 255 40.0
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 1.4e-33 147.5 266 39.1
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 5.2e-33 145.6 271 37.6
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 8.9e-33 144.8 267 38.2
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 1.2e-32 144.4 271 37.3
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 1.2e-32 144.4 276 37.0
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 2.6e-32 143.3 274 36.5
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 2.6e-32 143.3 148 51.4
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.7e-32 142.1 274 36.1
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 7.5e-32 141.7 276 35.5
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 9.8e-32 141.4 167 47.3
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 1.7e-31 140.6 162 47.5
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 1.3e-28 131.0 266 33.8
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 1.3e-28 131.0 266 33.8
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 1.1e-27 127.9 264 33.7
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.1e-27 127.9 210 40.0
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 1.5e-27 127.5 259 36.3
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 2.5e-27 126.7 182 44.0
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 7.3e-27 125.2 258 33.7
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 2.8e-26 123.2 234 38.5
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.4e-25 120.9 256 35.2
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.5e-24 117.5 261 33.0
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.6e-24 116.7 96 61.5
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.9e-23 113.2 101 55.4
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 1.9e-22 110.5 268 34.7
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.6e-21 107.5 146 44.5
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 2.7e-21 106.7 150 42.7
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 6.0e-21 105.5 182 38.5
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 1.0e-20 104.8 185 37.8
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 1.9e-19 100.5 81 58.0
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 7.3e-19 98.6 192 39.1
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 2.1e-18 97.1 219 36.5
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 4.7e-18 95.9 205 34.6
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.9e-14 84.0 62 62.9
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 1.9e-14 84.0 149 38.9
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 2.4e-14 83.6 62 64.5
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 7.1e-14 82.0 179 34.1
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 9.2e-14 81.6 62 64.5
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 7.8e-13 78.6 152 35.5
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.9e-11 73.9 181 32.6
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 3.3e-11 73.2 102 45.1
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.4e-06 57.8 36 69.4


User provided reference genes

Program Settings