Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 6.9e-276 953.4 485 100.0
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.5e-214 749.6 481 78.2
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 3.2e-204 715.3 489 73.4
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 6.6e-202 707.6 435 80.5
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.1e-193 680.2 504 70.2
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 1.6e-192 676.4 514 67.5
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 2.1e-192 676.0 511 68.5
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 6.8e-191 671.0 489 68.7
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 1.6e-187 659.8 492 67.1
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 1.0e-186 657.1 487 68.0
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 1.7e-186 656.4 483 69.2
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 1.1e-185 653.7 480 68.8
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 1.9e-185 652.9 525 64.6
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 5.6e-185 651.4 488 67.4
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 1.2e-184 650.2 508 67.9
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 2.8e-184 649.0 538 62.5
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 8.1e-184 647.5 468 68.6
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 8.1e-184 647.5 523 65.2
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 8.1e-184 647.5 475 68.6
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 1.8e-183 646.4 477 67.9
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.4e-183 646.0 545 63.1
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 4.0e-183 645.2 544 61.4
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 6.9e-183 644.4 495 67.3
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 9.0e-183 644.0 484 66.7
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 4.4e-182 641.7 526 64.4
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 4.4e-182 641.7 491 66.2
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 5.8e-182 641.3 506 64.6
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 5.8e-182 641.3 508 64.6
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 5.8e-182 641.3 510 66.1
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 4.9e-181 638.3 498 65.7
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 2.4e-180 636.0 498 65.9
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 2.4e-180 636.0 486 65.8
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 4.2e-180 635.2 510 65.1
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 1.2e-179 633.6 486 65.4
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 2.1e-179 632.9 491 64.4
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 1.3e-178 630.2 474 66.9
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.3e-178 630.2 491 64.4
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 2.3e-178 629.4 472 67.8
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 1.1e-177 627.1 477 66.5
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 1.5e-177 626.7 486 64.0
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.5e-177 625.9 477 65.6
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 7.3e-177 624.4 474 66.2
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 2.8e-176 622.5 529 60.7
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 8.1e-176 620.9 551 61.2
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 1.4e-175 620.2 495 64.6
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 1.8e-175 619.8 429 73.0
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 3.1e-175 619.0 586 58.4
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 4.0e-175 618.6 496 63.5
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 5.3e-175 618.2 579 59.4
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 3.4e-174 615.5 474 65.8
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 9.9e-174 614.0 454 68.3
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 2.2e-173 612.8 485 63.9
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 7.1e-172 607.8 478 65.7
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.6e-171 606.7 481 63.4
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 1.0e-170 604.0 606 55.3
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 1.0e-170 604.0 509 61.3
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 2.5e-169 599.4 492 60.6
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 3.3e-169 599.0 491 64.6
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 4.3e-169 598.6 480 63.3
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 9.6e-169 597.4 521 60.7
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 1.1e-167 594.0 482 62.7
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 5.3e-167 591.7 526 58.4
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 5.3e-167 591.7 468 62.4
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 2.0e-166 589.7 504 61.9
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 8.4e-165 584.3 499 59.3
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 1.4e-164 583.6 468 61.3
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 1.4e-164 583.6 471 67.1
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 5.5e-164 581.6 508 57.9
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 7.1e-164 581.3 498 58.8
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 2.1e-163 579.7 494 58.5
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 2.7e-163 579.3 493 59.8
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 4.8e-160 568.5 498 57.2
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 1.8e-159 566.6 497 57.1
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 3.4e-158 562.4 497 56.9
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.7e-157 560.1 494 58.3
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 1.7e-157 560.1 494 59.9
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.6e-155 553.5 466 60.7
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 2.2e-152 543.1 465 60.9
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 3.7e-152 542.3 382 74.3
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.9e-150 535.0 472 60.8
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 3.8e-149 532.3 417 64.7
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 1.4e-148 530.4 518 53.9
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 3.2e-148 529.3 624 50.5
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 3.0e-146 522.7 527 55.6
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 5.3e-143 511.9 573 52.0
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 8.5e-141 504.6 484 55.8
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 4.2e-140 502.3 421 62.2
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 2.2e-136 490.0 507 50.7
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 3.4e-134 482.6 329 74.5
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 6.5e-133 478.4 306 77.5
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 6.3e-128 461.8 334 71.9
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 5.9e-126 455.3 314 73.9
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 2.9e-125 453.0 382 62.6
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 5.5e-124 448.7 439 52.8
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 2.1e-123 446.8 428 55.4
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 7.0e-119 431.8 385 60.0
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 7.2e-116 421.8 403 58.8
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 7.2e-116 421.8 284 73.6
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 2.7e-115 419.9 486 46.3
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 3.6e-115 419.5 362 62.4
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 2.6e-113 413.3 320 65.0
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 3.4e-113 412.9 356 61.0
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 1.5e-108 397.5 415 51.1
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.0e-102 377.1 215 85.6
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 9.5e-100 368.2 462 44.6
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 5.4e-95 352.4 216 77.3
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 2.3e-93 347.1 221 73.8
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 6.6e-93 345.5 374 50.0
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.6e-86 324.3 241 67.2
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.4e-71 273.9 180 75.0
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 1.2e-67 261.5 545 35.4
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 2.0e-65 254.2 573 32.3
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 1.4e-63 248.1 258 54.3
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 1.3e-61 241.5 244 53.7
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 1.3e-56 224.9 159 67.9
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 5.3e-50 203.0 237 49.4
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 9.0e-50 202.2 161 63.4
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 1.5e-44 184.9 259 43.6
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 4.8e-43 179.9 107 75.7
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.4e-42 177.6 155 58.1
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 1.2e-41 175.3 509 30.8
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 5.8e-41 172.9 175 51.4
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 3.8e-40 170.2 107 72.9
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 7.9e-38 162.5 114 71.9
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 1.6e-35 154.8 95 74.7
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.8e-34 151.4 130 58.5
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.2e-33 148.7 430 30.0
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 1.2e-33 148.7 144 54.9
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 1.1e-31 142.1 265 34.3
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.1e-28 132.1 236 37.7
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.1e-28 132.1 236 37.7
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 7.4e-28 129.4 72 83.3
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.7e-27 128.3 72 83.3
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 5.9e-25 119.8 81 74.1
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.9e-24 117.5 78 70.5
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.0e-21 109.0 84 65.5
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 1.8e-21 108.2 78 66.7
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 2.0e-20 104.8 63 74.6
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 2.6e-20 104.4 84 63.1
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.7e-19 101.7 77 59.7
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 4.8e-19 100.1 82 59.8
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 6.3e-19 99.8 78 61.5
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 1.4e-18 98.6 82 59.8
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 1.8e-18 98.2 72 66.7
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 9.1e-18 95.9 73 64.4
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 2.0e-17 94.7 59 64.4
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 2.2e-16 91.3 81 56.8
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 5.0e-16 90.1 65 64.6
Sed0017736 Sechium edule HOM05D002097 ORTHO05D002248 2.5e-07 61.2 96 37.5
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 2.1e-06 58.2 103 33.0
SMO172G0032 Selaginella moellendorffii HOM05D002097 ORTHO05D002248 2.7e-06 57.8 254 26.0
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 4.7e-06 57.0 99 31.3
Sc08g0002790 Simmondsia chinensis HOM05D002097 ORTHO05D002248 4.7e-06 57.0 83 34.9
CsaV3_7G001150 Cucumis sativus L. HOM05D002097 ORTHO05D002248 8.0e-06 56.2 86 34.9
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 8.0e-06 56.2 97 36.1


User provided reference genes

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