Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 5.9e-294 1013.4 507 100.0
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.2e-185 653.7 511 65.8
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 4.6e-182 641.7 495 65.7
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 3.1e-178 629.0 486 65.4
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 1.2e-177 627.1 500 66.2
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 2.6e-177 625.9 505 63.0
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 2.2e-176 622.9 506 63.2
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 2.2e-176 622.9 503 63.6
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 3.8e-176 622.1 503 63.4
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 6.5e-176 621.3 497 63.4
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 2.5e-175 619.4 507 63.3
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 5.5e-175 618.2 494 63.0
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.2e-174 617.1 508 64.0
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 7.9e-174 614.4 493 62.7
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 7.9e-174 614.4 500 62.4
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 3.0e-173 612.5 480 63.1
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 1.1e-172 610.5 502 62.0
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 1.5e-172 610.1 518 62.0
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 2.0e-172 609.8 500 62.6
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 2.6e-172 609.4 508 60.0
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.6e-172 609.4 542 60.1
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 4.4e-172 608.6 498 61.6
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.8e-170 603.2 487 61.4
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 7.0e-170 601.3 491 61.3
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 9.1e-170 600.9 511 62.0
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 1.2e-169 600.5 484 61.4
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.5e-169 600.1 491 60.9
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 3.5e-169 599.0 511 60.3
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 4.5e-169 598.6 513 60.0
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 5.9e-169 598.2 501 60.5
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 1.7e-168 596.7 495 60.6
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 2.2e-168 596.3 458 65.9
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 2.2e-168 596.3 495 60.6
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 2.2e-168 596.3 525 59.4
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 3.8e-168 595.5 510 59.6
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 6.5e-168 594.7 511 60.5
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 8.5e-168 594.3 488 61.3
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 3.2e-167 592.4 527 58.6
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 7.2e-167 591.3 499 61.5
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 3.9e-165 585.5 499 60.7
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 5.2e-165 585.1 487 60.2
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.2e-165 585.1 489 60.9
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 1.5e-164 583.6 562 54.1
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 4.4e-164 582.0 518 57.9
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 5.7e-164 581.6 506 60.5
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 7.4e-164 581.3 481 59.5
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 9.7e-164 580.9 544 58.6
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.2e-163 579.7 485 61.0
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 6.3e-163 578.2 509 57.6
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 8.2e-163 577.8 496 59.3
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 3.1e-162 575.9 497 60.8
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 3.1e-162 575.9 500 58.8
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 2.0e-161 573.2 488 61.3
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 3.5e-161 572.4 499 58.1
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 3.5e-161 572.4 515 57.9
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 4.5e-161 572.0 493 59.2
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 6.5e-160 568.2 489 59.5
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 1.2e-158 563.9 499 58.5
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 2.7e-158 562.8 492 59.1
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 6.1e-158 561.6 472 61.0
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 8.0e-158 561.2 494 57.5
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.8e-157 560.1 502 58.4
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 2.3e-157 559.7 491 58.7
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 2.6e-156 556.2 509 56.6
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 3.4e-156 555.8 618 51.5
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 9.7e-156 554.3 501 57.9
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 1.3e-155 553.9 509 56.4
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 8.3e-155 551.2 484 57.9
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 1.8e-154 550.1 473 60.0
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 7.0e-154 548.1 497 56.3
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 2.2e-152 543.1 488 58.8
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 1.5e-151 540.4 448 63.2
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 3.2e-151 539.3 464 62.3
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 9.8e-148 527.7 597 51.6
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 9.8e-148 527.7 515 53.2
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.7e-147 526.9 495 57.2
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 3.8e-144 515.8 479 55.1
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 8.6e-144 514.6 483 55.3
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 1.9e-143 513.5 499 54.9
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 1.7e-139 500.4 500 54.4
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.4e-138 495.4 491 56.8
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 1.6e-137 493.8 509 52.5
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 1.7e-136 490.3 432 58.8
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 3.3e-135 486.1 608 48.0
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 9.8e-132 474.6 496 53.6
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 1.9e-130 470.3 402 61.4
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 3.9e-128 462.6 329 70.2
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.3e-125 453.4 408 60.0
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 1.9e-122 443.7 439 53.3
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 1.9e-122 443.7 392 59.9
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 1.6e-121 440.7 316 69.6
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 4.6e-121 439.1 427 54.8
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 3.1e-117 426.4 498 46.0
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 3.1e-117 426.4 559 46.2
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 7.6e-116 421.8 324 66.4
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 1.7e-115 420.6 375 61.1
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 2.2e-115 420.2 333 64.0
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 7.1e-114 415.2 284 70.1
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 1.5e-111 407.5 866 33.6
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 4.7e-110 402.5 452 51.1
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 3.1e-109 399.8 320 63.1
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 3.2e-106 389.8 381 54.6
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.6e-105 387.5 491 45.0
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 1.3e-104 384.4 431 49.9
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 7.6e-100 368.6 392 52.0
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 8.7e-96 355.1 222 73.4
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 7.3e-95 352.1 215 78.1
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.8e-93 347.4 216 74.5
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 5.7e-79 299.3 241 61.4
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 1.9e-71 274.2 597 32.8
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.4e-69 267.3 180 70.6
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 5.0e-67 259.6 214 62.1
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 6.1e-65 252.7 557 33.6
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 7.7e-60 235.7 244 52.0
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 1.9e-58 231.1 159 67.3
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 4.8e-46 189.9 186 55.9
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.7e-44 184.1 242 43.4
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 2.7e-41 174.1 107 76.6
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 6.8e-40 169.5 159 57.9
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 9.8e-39 165.6 107 71.0
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 5.4e-37 159.8 112 70.5
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 2.0e-36 157.9 409 30.8
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 3.5e-36 157.1 428 32.0
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 5.0e-35 153.3 169 50.3
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.1e-33 147.9 280 36.8
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 3.6e-33 147.1 269 37.5
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.3e-32 144.4 95 68.4
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 3.0e-32 144.1 95 67.4
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 5.4e-29 133.3 151 49.0
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 7.0e-29 132.9 72 83.3
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 7.7e-28 129.4 72 80.6
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.6e-25 121.7 77 67.5
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 3.2e-21 107.5 63 73.0
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 7.0e-21 106.3 78 61.5
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 1.3e-19 102.1 81 61.7
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 5.0e-19 100.1 83 61.4
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 6.6e-19 99.8 78 61.5
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 1.2e-17 95.5 83 59.0
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 2.8e-17 94.4 81 56.8
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 8.0e-17 92.8 81 56.8
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 1.0e-16 92.4 72 61.1
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 2.3e-16 91.3 78 56.4
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 2.3e-16 91.3 61 59.0
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 5.2e-16 90.1 73 58.9
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 7.5e-15 86.3 83 54.2
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 2.4e-13 81.3 63 60.3
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 4.1e-13 80.5 253 29.2
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 4.1e-13 80.5 253 29.2
SMO172G0032 Selaginella moellendorffii HOM05D002097 ORTHO05D002248 2.1e-09 68.2 254 26.8
AagrBONN_evm.TU.Sc2ySwM_344.985 Anthoceros agrestis HOM05D005264 ORTHO05D005428 2.3e-08 64.7 99 33.3
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 1.2e-07 62.4 103 35.0
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 2.6e-07 61.2 80 32.5
FvH4_2g15540 Fragaria vesca HOM05D002097 ORTHO05D002248 4.4e-07 60.5 80 32.5
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 4.4e-07 60.5 80 32.5
RcHm_v2.0_Chr6g0278711 Rosa chinensis HOM05D002097 ORTHO05D002248 4.4e-07 60.5 80 32.5
RcHm_v2.0_Chr6g0278641 Rosa chinensis HOM05D002097 ORTHO05D002248 9.8e-07 59.3 80 33.8
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 2.9e-06 57.8 117 34.2
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 2.9e-06 57.8 97 37.1
AUR62013011 Chenopodium quinoa HOM05D002097 ORTHO05D002248 4.9e-06 57.0 80 32.5
Sed0017736 Sechium edule HOM05D002097 ORTHO05D002248 4.9e-06 57.0 93 33.3
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 6.4e-06 56.6 90 33.3
Gohir.D02G226900 Gossypium hirsutum HOM05D002097 ORTHO05D002248 8.3e-06 56.2 80 32.5
Gorai.005G254800 Gossypium raimondii HOM05D002097 ORTHO05D002248 8.3e-06 56.2 80 32.5
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 8.3e-06 56.2 67 40.3


User provided reference genes

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