Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 9.0e-298 1026.2 520 100.0
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 9.3e-287 989.6 520 95.4
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 7.2e-271 936.8 524 91.4
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 2.6e-249 865.1 526 83.7
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 8.3e-235 817.0 519 81.3
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 8.6e-232 807.0 526 78.7
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 7.0e-226 787.3 519 78.8
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 3.5e-225 785.0 519 78.6
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 5.9e-225 784.3 527 76.3
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 2.1e-222 775.8 519 79.0
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 1.1e-218 763.5 518 76.3
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 5.8e-180 634.8 471 71.8
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 2.1e-174 616.3 528 61.6
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 4.5e-172 608.6 504 63.1
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 1.7e-171 606.7 504 62.9
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.1e-170 604.0 518 61.8
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.1e-170 604.0 522 61.3
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 4.2e-170 602.1 508 62.8
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 4.6e-169 598.6 531 59.5
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 1.0e-168 597.4 514 61.7
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 1.3e-168 597.0 521 60.8
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 1.5e-167 593.6 515 60.8
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 2.5e-167 592.8 496 61.9
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 2.5e-167 592.8 523 59.8
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 2.1e-166 589.7 522 60.7
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.8e-166 589.3 530 60.0
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.2e-164 583.9 503 60.2
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 2.0e-164 583.2 545 58.5
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 1.3e-163 580.5 501 61.5
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 3.8e-163 578.9 499 59.3
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 3.8e-163 578.9 509 60.1
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 1.1e-162 577.4 507 59.8
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 1.9e-162 576.6 507 59.4
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 5.5e-162 575.1 498 60.2
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 9.3e-162 574.3 508 59.3
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 1.6e-161 573.5 319 90.0
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 2.1e-161 573.2 501 61.3
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 2.7e-161 572.8 517 59.0
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 4.6e-161 572.0 499 60.3
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 4.6e-161 572.0 507 58.8
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 7.9e-161 571.2 517 58.2
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 1.0e-160 570.9 506 59.7
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 1.9e-159 566.6 529 58.0
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 2.5e-159 566.2 522 58.4
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 3.3e-159 565.8 498 60.4
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 7.4e-159 564.7 501 58.7
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 9.7e-159 564.3 612 52.5
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 2.8e-158 562.8 506 57.3
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 1.4e-157 560.5 508 57.5
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 1.4e-157 560.5 504 59.1
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 1.4e-157 560.5 519 58.2
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.1e-157 559.3 504 58.5
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 4.1e-157 558.9 512 57.0
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 4.1e-157 558.9 500 58.6
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 6.9e-157 558.1 502 58.4
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 6.9e-157 558.1 505 58.4
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 3.4e-156 555.8 518 56.2
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 3.4e-156 555.8 504 56.9
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 4.5e-156 555.4 577 53.9
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 4.5e-156 555.4 501 57.7
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 1.3e-155 553.9 509 57.8
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.4e-154 550.4 501 57.7
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 3.2e-154 549.3 504 57.5
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 7.2e-154 548.1 506 57.5
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 9.4e-154 547.7 506 56.7
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 4.6e-153 545.4 509 55.4
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 6.1e-153 545.0 480 60.2
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 2.3e-152 543.1 521 56.2
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 8.8e-152 541.2 505 57.4
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 1.1e-151 540.8 512 58.0
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 5.7e-151 538.5 511 57.9
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 6.3e-150 535.0 475 59.4
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 3.1e-149 532.7 501 56.7
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 1.1e-146 524.2 500 54.0
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 1.4e-146 523.9 469 61.8
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.4e-141 507.3 496 55.2
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 3.1e-141 506.1 499 54.1
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 1.7e-139 500.4 594 50.0
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 2.2e-139 500.0 464 57.3
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 6.5e-139 498.4 624 48.7
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 1.3e-134 484.2 524 54.0
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 6.3e-134 481.9 500 53.2
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 5.9e-132 475.3 504 52.4
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 7.7e-132 474.9 447 57.0
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 3.2e-130 469.5 506 53.0
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 8.0e-129 464.9 510 51.8
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.6e-124 450.7 522 49.0
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 2.7e-124 449.9 414 58.2
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 7.2e-122 441.8 331 68.6
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 5.7e-119 432.2 388 59.3
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 1.1e-114 417.9 322 66.1
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 3.6e-113 412.9 432 54.4
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 1.8e-112 410.6 397 55.7
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 2.9e-110 403.3 337 62.9
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.4e-109 401.0 426 53.3
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 2.4e-109 400.2 522 43.9
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 3.9e-107 392.9 326 62.3
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 4.3e-106 389.4 565 43.9
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 1.8e-104 384.0 460 49.1
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 9.2e-101 371.7 440 47.7
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 2.7e-100 370.2 388 52.6
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 6.0e-100 369.0 283 64.3
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 1.9e-98 364.0 399 50.9
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 4.1e-93 346.3 650 37.4
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 8.9e-88 328.6 499 40.1
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.9e-86 323.6 215 71.6
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 2.7e-84 317.0 221 68.3
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.5e-82 311.2 215 69.3
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.2e-76 291.6 241 60.6
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 4.8e-65 253.1 179 70.4
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 1.3e-62 245.0 561 33.0
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 1.1e-58 231.9 566 32.5
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 2.0e-55 221.1 214 56.1
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 2.6e-55 220.7 242 51.7
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 3.3e-50 203.8 159 61.6
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.2e-44 185.3 156 59.0
Haze_04614 Corylus avellana HOM05D005147 ORTHO05D006132 2.5e-42 177.6 180 54.4
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 7.2e-37 159.5 106 70.8
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 2.1e-36 157.9 420 34.8
ClCG04G001680 Citrullus lanatus HOM05D005147 ORTHO05D006132 2.6e-34 151.0 173 46.8
MBI07_g33483_MAGBIO Magnolia biondii HOM05D005147 ORTHO05D006132 2.6e-34 151.0 183 44.8
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 3.3e-34 150.6 114 66.7
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 3.7e-33 147.1 106 65.1
Cc06_g17710 Coffea canephora HOM05D005147 ORTHO05D006132 3.7e-33 147.1 271 38.7
HPP92_011450 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.0e-31 141.4 291 34.7
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.0e-30 136.7 94 67.0
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 6.5e-30 136.3 94 68.1
Migut.F02088 Erythranthe guttata HOM05D005147 ORTHO05D006132 7.2e-29 132.9 156 49.4
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.2e-28 132.1 427 27.6
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 1.8e-27 128.3 83 77.1
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 2.3e-27 127.9 81 76.5
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 4.4e-26 123.6 83 74.7
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 8.2e-25 119.4 81 71.6
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 2.4e-24 117.9 81 71.6
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 2.4e-24 117.9 71 74.6
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 7.0e-24 116.3 81 70.4
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 9.1e-24 115.9 86 68.6
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 7.7e-23 112.8 85 69.4
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.3e-22 112.1 71 70.4
Haze_04615 Corylus avellana HOM05D005147 ORTHO05D006132 1.7e-22 111.7 81 70.4
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 3.8e-22 110.5 78 70.5
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 1.5e-21 108.6 69 75.4
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.4e-19 102.1 78 64.1
SHI13697 Sapria himalayana HOM05D005147 ORTHO05D000014 8.8e-19 99.4 59 71.2
Hma1.2p1_1029F.1_g249580 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.3e-17 95.5 288 29.9
Hma1.2p1_3112F.1_g332769 Hydrangea macrophylla HOM05D005147 ORTHO05D006132 1.3e-17 95.5 288 29.9
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 8.2e-17 92.8 75 57.3
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 1.3e-14 85.5 61 63.9
Cre07.g328400 Chlamydomonas reinhardtii HOM05D005264 ORTHO05D005428 1.0e-06 59.3 68 47.1
SHI04181 Sapria himalayana HOM05D005264 ORTHO05D005428 2.2e-06 58.2 97 35.1
HPP92_016158 Vanilla planifolia HOM05D002097 ORTHO05D002248 2.2e-06 58.2 80 36.2
TWI77G0283 Tripterygium wilfordii HOM05D005264 ORTHO05D005428 2.9e-06 57.8 67 47.8
CiPaw.05G167900 Carya illinoinensis HOM05D005264 ORTHO05D005428 6.5e-06 56.6 67 43.3
Sc10g0006820 Simmondsia chinensis HOM05D005264 ORTHO05D005428 6.5e-06 56.6 67 44.8
HPP92_004408 Vanilla planifolia HOM05D002097 ORTHO05D002248 6.5e-06 56.6 80 35.0


User provided reference genes

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