Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
PT12G06130
(Populus trichocarpa)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Populus trichocarpa | Orthologous gene family | PT12G06130 PT15G05310 | 2 |  |
| Best-Hits-and-Inparalogs(BHI)family | PT12G06130 | 1 | ||
| Tree-based ortholog | PT15G05310 PT12G06130 | 2 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | many-to-1 | ATR_00110G00090 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00110G00090 | 1 | ||
| Tree-based ortholog | many-to-1 | ATR_00110G00090 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | many-to-1 | AL1G19360 | 1 | |
| Anchor point | N/A | AL1G19360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL1G19360 | 1 | ||
| Tree-based ortholog | many-to-1 | AL1G19360 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-1 | AT1G18450 | 1 | |
| Anchor point | N/A | AT1G49240 AT1G18450 AT1G73910 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G18450 | 1 | ||
| Tree-based ortholog | many-to-many | AT1G73910 AT1G18450 | 2 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV5G05170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV5G05170 | 1 | ||
| Tree-based ortholog | many-to-1 | BV5G05170 | 1 | ||
| Brassica rapa | Best-Hits-and-Inparalogs(BHI)family | 1-to-many | BR04G05160 BR09G34930 | 2 | |
| Tree-based ortholog | many-to-many | BR07G16700 BR09G40320 | 2 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G17270 CRU_001G17300 | 2 | |
| Anchor point | N/A | CRU_001G17270 CRU_001G36530 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G17300 | 1 | ||
| Tree-based ortholog | many-to-many | CRU_002G19510 CRU_001G17270 CRU_001G17300 | 3 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00013G00250 | 1 | |
| Anchor point | N/A | CP00013G00250 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00013G00250 | 1 | ||
| Tree-based ortholog | many-to-1 | CP00013G00250 | 1 | ||
| Chlamydomonas reinhardtii | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR13G07280 | 1 | |
| Tree-based ortholog | many-to-1 | CR06G00100 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL06G15490 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL06G15490 | 1 | ||
| Tree-based ortholog | many-to-1 | CL06G15490 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00035G00560 | 1 | |
| Anchor point | N/A | CS00035G00560 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00035G00560 | 1 | ||
| Tree-based ortholog | many-to-1 | CS00035G00560 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00030G02240 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00030G02240 | 1 | ||
| Tree-based ortholog | many-to-1 | CM00030G02240 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-1 | EG0002G06080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0002G06080 | 1 | ||
| Tree-based ortholog | many-to-1 | EG0002G06080 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-many | FV0G38730 FV3G19800 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV3G19800 | 1 | ||
| Tree-based ortholog | many-to-many | FV0G38730 FV3G19800 | 2 | ||
| Glycine max | Orthologous gene family | many-to-many | GM03G25550 GM07G13230 GM08G04490 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM03G25550 GM07G13230 | 2 | ||
| Tree-based ortholog | many-to-many | GM07G13230 GM03G25550 | 2 | ||
| Gossypium raimondii | Orthologous gene family | many-to-1 | GR13G24980 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR13G24980 | 1 | ||
| Tree-based ortholog | many-to-1 | GR13G24980 | 1 | ||
| Lotus japonicus | Orthologous gene family | many-to-1 | LJ2G015590 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ2G015590 | 1 | ||
| Tree-based ortholog | many-to-1 | LJ2G015590 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-1 | MD11G024700 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD11G024700 | 1 | ||
| Tree-based ortholog | many-to-many | MD03G021390 MD11G024700 | 2 | ||
| Manihot esculenta | Orthologous gene family | many-to-1 | ME06446G00230 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME06446G00230 | 1 | ||
| Tree-based ortholog | many-to-1 | ME06446G00230 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-many | MT5G066400 MT8G464900 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MT8G464900 MT5G066400 | 2 | ||
| Tree-based ortholog | many-to-many | MT8G464900 MT5G066400 | 2 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-1 | OS08G04280 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G04280 | 1 | ||
| Tree-based ortholog | many-to-1 | OS08G04280 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL04G02560 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL04G02560 | 1 | ||
| Tree-based ortholog | many-to-1 | OL04G02560 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00066G01030 PP00238G00340 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00066G01030 PP00238G00340 | 2 | ||
| Tree-based ortholog | many-to-many | PP00066G01030 PP00238G00340 | 2 | ||
| Prunus persica | Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_004G14710 | 1 | |
| Tree-based ortholog | many-to-1 | PPE_004G14710 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30174G03830 | 1 | |
| Anchor point | N/A | RC30174G03830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30174G03830 | 1 | ||
| Tree-based ortholog | many-to-1 | RC30174G03830 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL12G037980 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL12G037980 | 1 | ||
| Tree-based ortholog | many-to-1 | SL12G037980 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST12G020720 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST12G020720 | 1 | ||
| Tree-based ortholog | many-to-1 | ST12G020720 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-1 | TP5G29110 | 1 | |
| Anchor point | N/A | TP1G16390 TP1G36120 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TP1G16390 TP5G29110 | 2 | ||
| Tree-based ortholog | many-to-many | TP5G29110 TP1G16390 | 2 | ||
| Theobroma cacao | Orthologous gene family | many-to-1 | TC0009G21860 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G21860 | 1 | ||
| Tree-based ortholog | many-to-1 | TC0009G21860 | 1 | ||
| Vitis vinifera | Anchor point | N/A | VV17G05730 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV13G05310 | 1 | ||
| Tree-based ortholog | many-to-1 | VV17G05730 | 1 | ||
| Zea mays | Orthologous gene family | many-to-1 | ZM01G00770 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G00770 | 1 | ||
| Tree-based ortholog | many-to-1 | ZM01G00770 | 1 |