Citrus sinensis
Citrus sinensis, sweet orange, is the first genome available from the economically important citrus genes (which includes mandarins, lemons, pummelos and grapefruit). Citrus fruits are a source of fruits and juices which are the prime source of vitamin C for humans. Yearly 10.9 million tons of citrus fruits are grown worth an estimated $9.3 billion. The complete genome sequence is a valuable resource to improve these crops. Furthermore, the fruits have unique botanical properties for which the genetic basis is unknown.
Publication:
The draft genome of sweet orange (Citrus sinensis). Nat Genetitcs 45, 59-66 (2013).
Info and Links
Source | JGI v1 assembly and v1.0 annotation |
PLAZA identifier | csi |
NCBI link | Citrus sinensis |
Mitochondrion | Not available | Chloroplast | DQ864733 |
Toolbox
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Annotations
Page 1 of 1276, showing 20 records out of 25520 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Gene family |
---|---|---|---|---|---|---|---|
CS00001G00010 | CS00001G00010.1 | 6930 | 8905 | - | scaffold00001 | coding | HOM03D002319 |
CS00001G00020 | CS00001G00020.1 | 12402 | 14228 | - | scaffold00001 | coding | HOM03D000001 |
CS00001G00030 | CS00001G00030.1 | 15680 | 21213 | + | scaffold00001 | coding | HOM03D001052 |
CS00001G00040 | CS00001G00040.1 | 25619 | 26683 | - | scaffold00001 | coding | HOM03D001646 |
CS00001G00050 | CS00001G00050.1 | 36742 | 38371 | - | scaffold00001 | coding | HOM03D000406 |
CS00001G00060 | CS00001G00060.1 | 39912 | 40366 | - | scaffold00001 | coding | HOM03D007982 |
CS00001G00070 | CS00001G00070.1 | 49272 | 52025 | - | scaffold00001 | coding | HOM03D007039 |
CS00001G00080 | CS00001G00080.1 | 53744 | 58512 | + | scaffold00001 | coding | HOM03D000403 |
CS00001G00090 | CS00001G00090.1 | 62953 | 66327 | - | scaffold00001 | coding | HOM03D000064 |
CS00001G00100 | CS00001G00100.1 | 71760 | 72029 | - | scaffold00001 | coding | HOM03D007184 |
CS00001G00110 | CS00001G00110.1 | 79699 | 83516 | - | scaffold00001 | coding | HOM03D000370 |
CS00001G00120 | CS00001G00120.1 | 94633 | 98820 | + | scaffold00001 | coding | HOM03D000026 |
CS00001G00130 | CS00001G00130.1 | 99944 | 101957 | + | scaffold00001 | coding | HOM03D004373 |
CS00001G00140 | CS00001G00140.1 | 102710 | 103349 | - | scaffold00001 | coding | HOM03D007655 |
CS00001G00150 | CS00001G00150.1 | 105543 | 111914 | - | scaffold00001 | coding | HOM03D000137 |
CS00001G00160 | CS00001G00160.1 | 119363 | 122235 | - | scaffold00001 | coding | HOM03D000129 |
CS00001G00170 | CS00001G00170.1 | 126408 | 137920 | - | scaffold00001 | coding | HOM03D005354 |
CS00001G00180 | CS00001G00180.1 | 139350 | 140730 | - | scaffold00001 | coding | HOM03D006339 |
CS00001G00190 | CS00001G00190.1 | 148023 | 152101 | + | scaffold00001 | coding | HOM03D000595 |
CS00001G00200 | CS00001G00200.1 | 155320 | 159209 | + | scaffold00001 | coding | HOM03D000595 |