Gossypium raimondii
Gossypium raimondii is thought to be a progenitor of the D sub-genome of commercially grown cotton varieties (Gossypium hirsutum and Gossypium barbadense, which are due to their complex genome structure difficult to sequence). Cotton is one of the world's most important economically grown crops, the fibers it produces are used for the production of threads and fabrics. An estimated 5% of the available arable land worldwide is dedicated to growing cotton. Furthermore it is a valuable model species to study cell elongation and cell wall production.
Publication:
The draft genome of a diploid cotton Gossypium raimondii. Nature Genetics 44, 1098-1103 (2012).
Info and Links
Source | JGI annotation v2.1 on assembly v2.0 |
PLAZA identifier | gra |
NCBI link | Gossypium raimondii |
Mitochondrion | Not available | Chloroplast | HQ325744 |
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Annotations
Page 1 of 1882, showing 20 records out of 37632 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Gene family |
---|---|---|---|---|---|---|---|
GR00G00010 | GR00G00010.1 | 1717 | 1923 | + | scaffold_23 | coding | orphan gene |
GR00G00020 | GR00G00020.1 | 2463 | 4622 | + | scaffold_23 | coding | HOM03D014045 |
GR00G00030 | GR00G00030.1 | 28095 | 28460 | + | scaffold_23 | coding | HOM03D000079 |
GR00G00040 | GR00G00040.1 | 33299 | 34954 | + | scaffold_23 | coding | HOM03D014045 |
GR00G00050 | GR00G00050.1 | 36410 | 48730 | - | scaffold_23 | coding | HOM03D000025 |
GR00G00060 | GR00G00060.1 | 59611 | 64414 | - | scaffold_23 | coding | HOM03D000025 |
GR00G00070 | GR00G00070.1 | 18 | 1414 | + | scaffold_289 | coding | HOM03D000139 |
GR00G00080 | GR00G00080.1 | 3335 | 4731 | + | scaffold_289 | coding | HOM03D000139 |
GR00G00090 | GR00G00090.1 | 6672 | 7987 | + | scaffold_289 | coding | HOM03D000139 |
GR00G00100 | GR00G00100.1 | 967 | 3355 | + | scaffold_223 | coding | HOM03D000027 |
GR00G00110 | GR00G00110.1 | 1659 | 6094 | - | scaffold_177 | coding | HOM03D008685 |
GR00G00120 | GR00G00120.1 | 7157 | 8078 | - | scaffold_177 | coding | HOM03D014262 |
GR00G00130 | GR00G00130.1 | 9294 | 10461 | - | scaffold_167 | coding | HOM03D000014 |
GR00G00140 | GR00G00140.1 | 2607 | 4539 | - | scaffold_127 | coding | HOM03D000027 |
GR00G00150 | GR00G00150.1 | 10607 | 11788 | + | scaffold_127 | coding | HOM03D000020 |
GR00G00160 | GR00G00160.1 | 2414 | 2965 | - | scaffold_40 | coding | HOM03D000167 |
GR00G00170 | GR00G00170.1 | 11102 | 11437 | + | scaffold_40 | coding | HOM03D000167 |
GR00G00180 | GR00G00180.1 | 2539 | 5608 | - | scaffold_318 | coding | HOM03D000035 |
GR00G00190 | GR00G00190.1 | 24589 | 31761 | - | scaffold_33 | coding | HOM03D000985 |
GR00G00200 | GR00G00200.1 | 33510 | 34178 | + | scaffold_33 | coding | HOM03D000285 |