Capsella rubella
Capsella rubella, commonly referred to as the Red Shepherd's purse for the characteristic shape of its siliques, is a close relative of the model organism Arabidopsis thaliana. Capsella rubella shifted from an outcrossing species to a self-compatible species less than 200,000 years ago. By comparing its genome to close relatives which still exhibit self-incompatibility the molecular and genetic mechanisms of compatibility can be examined.
Publication:
The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nature Genetics 45, 831-835 (2013)
Info and Links
Source | JGI annotation v1.0 on assembly v1 |
PLAZA identifier | cru |
NCBI link | Capsella rubella |
Mitochondrion | Not available | Chloroplast | Not available |
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Annotations
Page 1 of 1327, showing 20 records out of 26521 total, starting on record 1, ending on 20
Gene | Transcript | Start | Stop | Strand | Chr | Type | Gene family |
---|---|---|---|---|---|---|---|
CRU_001G00010 | CRU_001G00010.1 | 2065 | 3180 | - | scaffold_1 | coding | HOM03D004230 |
CRU_001G00020 | CRU_001G00020.1 | 3369 | 7199 | + | scaffold_1 | coding | HOM03D007255 |
CRU_001G00030 | CRU_001G00030.1 | 7595 | 9248 | + | scaffold_1 | coding | HOM03D000228 |
CRU_001G00040 | CRU_001G00040.1 | 9669 | 10283 | + | scaffold_1 | coding | HOM03D007796 |
CRU_001G00050 | CRU_001G00050.1 | 10995 | 13393 | + | scaffold_1 | coding | HOM03D000894 |
CRU_001G00060 | CRU_001G00060.1 | 14315 | 16819 | + | scaffold_1 | coding | HOM03D000595 |
CRU_001G00070 | CRU_001G00070.1 | 17639 | 21235 | + | scaffold_1 | coding | HOM03D000595 |
CRU_001G00080 | CRU_001G00080.1 | 22156 | 23929 | + | scaffold_1 | coding | HOM03D000037 |
CRU_001G00090 | CRU_001G00090.1 | 25019 | 28823 | - | scaffold_1 | coding | HOM03D004577 |
CRU_001G00100 | CRU_001G00100.1 | 29192 | 31723 | - | scaffold_1 | coding | HOM03D000202 |
CRU_001G00110 | CRU_001G00110.1 | 32281 | 35344 | - | scaffold_1 | coding | HOM03D006089 |
CRU_001G00120 | CRU_001G00120.1 | 35350 | 37883 | + | scaffold_1 | coding | HOM03D002602 |
CRU_001G00130 | CRU_001G00130.1 | 38738 | 40143 | - | scaffold_1 | coding | HOM03D001770 |
CRU_001G00140 | CRU_001G00140.1 | 41321 | 54507 | - | scaffold_1 | coding | HOM03D002354 |
CRU_001G00150 | CRU_001G00150.1 | 57019 | 57579 | + | scaffold_1 | coding | HOM03D002201 |
CRU_001G00160 | CRU_001G00160.1 | 60713 | 63728 | - | scaffold_1 | coding | HOM03D000165 |
CRU_001G00170 | CRU_001G00170.1 | 63801 | 66934 | + | scaffold_1 | coding | HOM03D000002 |
CRU_001G00180 | CRU_001G00180.1 | 67426 | 69836 | + | scaffold_1 | coding | HOM03D000147 |
CRU_001G00190 | CRU_001G00190.1 | 70355 | 72324 | + | scaffold_1 | coding | HOM03D007112 |
CRU_001G00200 | CRU_001G00200.1 | 73401 | 77485 | - | scaffold_1 | coding | HOM03D001653 |