Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
ATR_00009G01340
(Amborella trichopoda)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | ATR_00009G01340 | 1 |  |
| Tree-based ortholog | ATR_00042G00250 ATR_00009G01340 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | ATR_00009G01340 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Arabidopsis lyrata | Tree-based ortholog | many-to-many | AL6G20300 AL8G20340 AL6G20320 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL8G20580 | 1 | ||
| Arabidopsis thaliana | Tree-based ortholog | many-to-many | AT5G20010 AT5G20020 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT5G55190 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-many | BV2G12490 BV8G03410 | 2 | |
| Tree-based ortholog | many-to-1 | BV2G12490 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV2G12490 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR02G14640 | 1 | |
| Tree-based ortholog | many-to-1 | BR03G08690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G09920 | 1 | ||
| Capsella rubella | Tree-based ortholog | many-to-many | CRU_006G17890 CRU_006G17880 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G15140 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00075G00600 | 1 | |
| Tree-based ortholog | many-to-1 | CP00075G00600 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00075G00600 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | 1-to-1 | CR03G10790 | 1 | |
| Tree-based ortholog | many-to-1 | CR03G10790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR03G10790 | 1 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-many | CL06G11380 CL06G11390 | 2 | |
| Tree-based ortholog | many-to-many | CL06G11380 CL06G11390 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CL06G11380 CL06G11390 | 2 | ||
| Citrus sinensis | Orthologous gene family | 1-to-many | CS00005G03150 CS00051G00130 | 2 | |
| Tree-based ortholog | many-to-many | CS00005G03150 CS00051G00130 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00051G00130 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-many | CM00014G05990 CM00099G00110 | 2 | |
| Tree-based ortholog | many-to-many | CM00099G00100 CM00099G00110 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00099G00110 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0003G32290 | 1 | |
| Tree-based ortholog | many-to-many | EG0003G09190 EG0003G32290 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0003G32290 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV2G40570 | 1 | |
| Tree-based ortholog | many-to-1 | FV1G06240 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G40570 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM04G07360 GM04G07370 GM06G07410 ... | 4 | |
| Tree-based ortholog | many-to-many | GM04G07350 GM06G07400 GM04G07370 ... | 6 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM06G07410 GM04G07360 GM04G07370 | 3 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR10G06610 | 1 | |
| Tree-based ortholog | many-to-1 | GR10G06610 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR10G06610 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-many | LJ1G027180 LJ1G027220 | 2 | |
| Tree-based ortholog | many-to-many | LJ1G027220 LJ1G027180 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G027220 | 1 | ||
| Malus domestica | Tree-based ortholog | many-to-many | MD00G101360 MD00G468950 MD02G003530 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD08G014400 MD15G005880 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME00847G01340 | 1 | |
| Tree-based ortholog | many-to-many | ME07478G00530 ME03268G00020 ME00847G01340 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME00847G01340 | 1 | ||
| Medicago truncatula | Tree-based ortholog | many-to-many | MT3G107713 MT3G107707 MT3G107717 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MT3G107707 MT3G107717 | 2 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS05G49890 | 1 | |
| Tree-based ortholog | many-to-1 | OS05G49890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS05G49890 | 1 | ||
| Ostreococcus lucimarinus | Tree-based ortholog | many-to-1 | OL13G01110 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL13G01110 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | many-to-many | PP00010G01140 PP00010G01120 PP00044G00570 ... | 6 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00044G01650 PP00029G00490 | 2 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT18G03070 PT18G03090 | 2 | |
| Tree-based ortholog | many-to-many | PT18G03090 PT18G03070 PT06G25040 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT18G03090 PT18G03070 | 2 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_001G47610 | 1 | |
| Tree-based ortholog | many-to-many | PPE_001G47610 PPE_007G25560 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_001G47610 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC29848G02220 | 1 | |
| Tree-based ortholog | many-to-1 | RC29848G02220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC29848G02220 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | many-to-many | SL05G023800 SL01G104700 SL01G104680 | 3 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL05G023800 | 1 | ||
| Solanum tuberosum | Tree-based ortholog | many-to-many | ST05G019390 ST01G041700 | 2 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST05G019390 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP6G17120 | 1 | |
| Tree-based ortholog | many-to-1 | TP6G24380 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP6G17120 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0009G11520 | 1 | |
| Tree-based ortholog | many-to-1 | TC0009G11520 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0009G11520 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-many | VV04G11720 VV11G05990 | 2 | |
| Tree-based ortholog | many-to-many | VV09G06250 VV04G11730 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV04G11720 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-1 | ZM06G31800 | 1 | |
| Tree-based ortholog | many-to-many | ZM06G31800 ZM08G24720 ZM08G23570 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM06G31800 | 1 |