Gene: ATR_00009G01340 (Amborella trichopoda)

Overview top

Gene Identifier
ATR_00009G01340
Transcript Identifier
ATR_00009G01340.1
Gene Type
Coding gene
Location
scaffold00009 : 3970048-3979327 : negative

Family

Gene family
HOM03D001415
(112 genes in 31 species)
specific family
Subfamily
ORTHO03D006518
(32 genes in 22 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine)
binding nuclear protein Ran
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00009.135
idevm_27.model.AmTr_v1.0_scaffold00009.135

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006184IEAInterProGTP catabolic process
GO:0007165IEAInterProsignal transduction
GO:0007264IEAInterProsmall GTPase mediated signal transduction
GO:0015031IEAInterProprotein transport
GO:0006886IEAInterProintracellular protein transport
GO:0006913IEAInterPronucleocytoplasmic transport
GO:0006606ISOPLAZA Integrative Orthologyprotein import into nucleusAT5G55190 AT5G20020 AT5G20010
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT5G20020 AT5G20010
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT5G20010
GO:0051169IEAPLAZA Homologynuclear transportHOM03D001415
GO:1901069IEAPLAZA Homologyguanosine-containing compound catabolic processHOM03D001415

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003924IEAInterProGTPase activity
GO:0005525IEAInterProGTP binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT5G55190 AT5G20020 AT5G20010

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAInterProintracellular
GO:0016020IEAInterPromembrane
GO:0005794ISOPLAZA Integrative OrthologyGolgi apparatusAT5G55190 AT5G20020 AT5G20010
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G55190
GO:0005634ISOPLAZA Integrative OrthologynucleusAT5G20020
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT5G20020
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT5G20020
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G20010
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT5G20010
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G20010
GO:0005618ISOPLAZA Integrative Orthologycell wallAT5G20010

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR001806Small GTPase superfamily
IPR002041Ran GTPase
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR003579Small GTPase superfamily, Rab type
IPR020849Small GTPase superfamily, Ras type
IPR003578Small GTPase superfamily, Rho type
IPR005225Small GTP-binding protein domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.