Integrative Orthology Viewer: AT5G48400 (Arabidopsis thaliana)
Inparalogs
Organism | Source | Genes | #genes | Details |
---|---|---|---|---|
Arabidopsis thaliana | Orthologous gene family | AT1G05200 AT1G42540 AT2G17260 ... | 11 | |
Tree-based ortholog | AT5G48400 | 1 | ||
Anchor point | AT3G07520 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | AT5G48400 | 1 |
Orthologs
Organism | Source | Type | Genes | #genes | Details |
---|---|---|---|---|---|
Amborella trichopoda | Orthologous gene family | many-to-many | ATR_00010G00990 ATR_00010G01010 ATR_00019G01780 ... | 10 | |
Tree-based ortholog | 1-to-many | ATR_00062G00300 ATR_00019G01800 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ATR_00019G01790 ATR_00019G01800 ATR_00023G02080 | 3 | ||
Arabidopsis lyrata | Orthologous gene family | many-to-many | AL0G01540 AL1G04680 AL1G38370 ... | 16 | |
Tree-based ortholog | 1-to-1 | AL5G06860 | 1 | ||
Anchor point | 1-to-many | AL8G11200 AL3G07940 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL8G11210 | 1 | ||
Beta vulgaris | Orthologous gene family | many-to-many | BV0G15460 BV1G00920 BV6G13770 ... | 7 | |
Tree-based ortholog | 1-to-1 | BV1G00920 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G15460 | 1 | ||
Brassica rapa | Orthologous gene family | many-to-many | BR00G11730 BR00G11750 BR01G02990 ... | 18 | |
Tree-based ortholog | 1-to-many | BR09G04570 BR02G34800 BR06G30690 ... | 6 | ||
Anchor point | 1-to-many | BR09G04570 BR06G30690 BR02G34800 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR02G34800 | 1 | ||
Capsella rubella | Orthologous gene family | many-to-many | CRU_001G04150 CRU_001G32590 CRU_002G06730 ... | 12 | |
Tree-based ortholog | 1-to-many | CRU_008G07920 CRU_008G07910 | 2 | ||
Anchor point | 1-to-many | CRU_008G07910 CRU_003G06740 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_008G07910 | 1 | ||
Carica papaya | Orthologous gene family | many-to-many | CP00008G02100 CP00026G01640 | 2 | |
Tree-based ortholog | 1-to-many | CP00008G02080 CP00060G00160 | 2 | ||
Anchor point | 1-to-1 | CP00008G00440 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00023G00400 | 1 | ||
Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-many | CR12G16760 CR16G08120 CR13G05360 | 3 | |
Citrullus lanatus | Orthologous gene family | many-to-many | CL01G21130 CL02G08640 CL02G08650 ... | 10 | |
Tree-based ortholog | 1-to-1 | CL08G13670 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL07G12580 | 1 | ||
Citrus sinensis | Orthologous gene family | many-to-many | CS00002G06880 CS00017G02330 CS00017G02350 ... | 12 | |
Tree-based ortholog | 1-to-1 | CS00075G00020 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CS00075G00030 CS00075G00020 | 2 | ||
Cucumis melo | Orthologous gene family | many-to-many | CM00007G10130 CM00014G06930 CM00029G04260 ... | 6 | |
Tree-based ortholog | 1-to-1 | CM00014G06920 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00014G06940 | 1 | ||
Eucalyptus grandis | Orthologous gene family | many-to-many | EG0003G01290 EG0003G02190 EG0003G02200 ... | 19 | |
Tree-based ortholog | 1-to-1 | EG0003G01290 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0003G01300 EG0692G00010 EG0670G00020 ... | 13 | ||
Fragaria vesca | Orthologous gene family | many-to-many | FV0G44880 FV1G16410 FV1G20440 ... | 31 | |
Tree-based ortholog | 1-to-many | FV7G33420 FV0G44880 FV0G28690 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | FV7G19010 FV7G19000 | 2 | ||
Glycine max | Orthologous gene family | many-to-many | GM01G36210 GM04G01760 GM06G01860 ... | 17 | |
Tree-based ortholog | 1-to-many | GM12G00210 GM04G43670 GM14G00200 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GM07G35290 | 1 | ||
Gossypium raimondii | Orthologous gene family | many-to-many | GR01G22730 GR01G22740 GR01G22750 ... | 10 | |
Tree-based ortholog | 1-to-many | GR01G22730 GR01G10150 GR01G22750 | 3 | ||
Anchor point | 1-to-many | GR01G22730 GR01G10140 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR01G22750 GR01G22740 GR01G22760 | 3 | ||
Lotus japonicus | Orthologous gene family | many-to-many | LJ1G025560 LJ1G043950 | 2 | |
Tree-based ortholog | 1-to-1 | LJ6G026070 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | LJ1G025520 LJ1G025540 | 2 | ||
Malus domestica | Orthologous gene family | many-to-many | MD00G167640 MD00G252240 MD00G287210 ... | 22 | |
Tree-based ortholog | 1-to-many | MD00G374070 MD05G005090 MD00G027300 ... | 6 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD00G287210 MD02G022630 | 2 | ||
Manihot esculenta | Orthologous gene family | many-to-many | ME01895G00210 ME02040G00100 ME02943G01150 ... | 11 | |
Tree-based ortholog | 1-to-1 | ME08873G00300 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME00847G02670 | 1 | ||
Medicago truncatula | Orthologous gene family | many-to-many | MT2G015260 MT2G088430 MT2G088450 ... | 7 | |
Tree-based ortholog | 1-to-many | MT2G015290 MT2G015280 MT2G015310 | 3 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MT3G105595 MT3G105610 | 2 | ||
Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS02G02540 OS04G49570 OS06G09130 ... | 5 | |
Tree-based ortholog | 1-to-1 | OS09G26160 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | OS09G25990 OS09G25960 OS09G26000 | 3 | ||
Physcomitrella patens | Orthologous gene family | many-to-1 | PP00056G00160 | 1 | |
Tree-based ortholog | 1-to-1 | PP00253G00100 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00056G00160 PP00253G00100 | 2 | ||
Populus trichocarpa | Orthologous gene family | many-to-many | PT02G00740 PT02G22990 PT02G23000 ... | 10 | |
Tree-based ortholog | 1-to-1 | PT18G01310 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT18G01150 PT18G01070 PT18G01320 ... | 18 | ||
Prunus persica | Orthologous gene family | many-to-many | PPE_001G40690 PPE_002G02990 PPE_002G10710 ... | 20 | |
Tree-based ortholog | 1-to-many | PPE_002G10720 PPE_002G10760 PPE_002G10790 ... | 4 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PPE_002G10790 PPE_002G10720 PPE_002G10760 ... | 4 | ||
Ricinus communis | Orthologous gene family | many-to-many | RC29600G00110 RC29600G00120 RC29830G00820 ... | 7 | |
Tree-based ortholog | 1-to-many | RC29600G00120 RC30170G07110 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | RC29848G00450 RC29848G00440 | 2 | ||
Solanum lycopersicum | Orthologous gene family | many-to-many | SL02G082480 SL04G082610 SL05G045650 ... | 5 | |
Tree-based ortholog | 1-to-1 | SL06G063210 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL06G063200 | 1 | ||
Solanum tuberosum | Orthologous gene family | many-to-many | ST01G049860 ST02G025840 ST04G036090 ... | 6 | |
Tree-based ortholog | 1-to-1 | ST06G022330 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST08G007730 | 1 | ||
Thellungiella parvula | Orthologous gene family | many-to-many | TP1G04050 TP1G37300 TP2G18760 ... | 7 | |
Tree-based ortholog | 1-to-1 | TP2G18760 | 1 | ||
Anchor point | 1-to-1 | TP2G18760 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP2G18760 | 1 | ||
Theobroma cacao | Orthologous gene family | many-to-many | TC0001G00360 TC0001G00370 TC0001G20250 ... | 11 | |
Tree-based ortholog | 1-to-1 | TC0001G20250 | 1 | ||
Anchor point | 1-to-1 | TC0001G20240 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | TC0001G20250 TC0001G20240 | 2 | ||
Vitis vinifera | Orthologous gene family | many-to-many | VV03G03340 VV04G06300 VV04G06410 ... | 10 | |
Tree-based ortholog | 1-to-many | VV11G08970 VV11G08960 | 2 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-many | VV11G08960 VV11G08970 | 2 | ||
Zea mays | Orthologous gene family | many-to-many | ZM02G30820 ZM02G36450 ZM05G13020 ... | 7 | |
Tree-based ortholog | 1-to-1 | ZM05G42790 | 1 | ||
Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM07G14780 | 1 |