Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT3G56940
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT3G56940 | 1 |  |
| Tree-based ortholog | AT3G56940 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT3G56940 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Orthologous gene family | 1-to-1 | ATR_00095G00870 | 1 | |
| Tree-based ortholog | 1-to-1 | ATR_00095G00870 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00095G00870 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL5G27290 | 1 | |
| Tree-based ortholog | 1-to-1 | AL5G27290 | 1 | ||
| Anchor point | N/A | AL5G27290 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL5G27290 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV3G00220 | 1 | |
| Tree-based ortholog | 1-to-1 | BV3G00220 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV3G00220 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-1 | BR07G14970 | 1 | |
| Tree-based ortholog | 1-to-1 | BR07G14970 | 1 | ||
| Anchor point | N/A | BR09G37520 BR04G03160 BR07G14970 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR07G14970 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_005G22370 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_005G22370 | 1 | ||
| Anchor point | N/A | CRU_005G22370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_005G22370 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00092G00570 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00092G00570 | 1 | ||
| Anchor point | N/A | CP00092G00570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00092G00570 | 1 | ||
| Chlamydomonas reinhardtii | Orthologous gene family | 1-to-many | CR07G08040 CR12G03400 | 2 | |
| Tree-based ortholog | 1-to-many | CR07G08040 CR12G03400 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | CR07G08040 CR12G03400 | 2 | ||
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL04G04990 | 1 | |
| Tree-based ortholog | 1-to-1 | CL04G04990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL04G04990 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00091G00390 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00091G00390 | 1 | ||
| Anchor point | N/A | CS00091G00390 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00091G00390 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00107G00040 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00107G00040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00107G00040 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-1 | EG0001G18190 | 1 | |
| Tree-based ortholog | 1-to-1 | EG0001G18190 | 1 | ||
| Anchor point | N/A | EG0001G18190 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0001G18190 | 1 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV6G26670 | 1 | |
| Tree-based ortholog | 1-to-1 | FV6G26670 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV6G26670 | 1 | ||
| Glycine max | Orthologous gene family | 1-to-many | GM03G27380 GM19G30350 | 2 | |
| Tree-based ortholog | 1-to-many | GM19G30350 GM03G27380 | 2 | ||
| Anchor point | N/A | GM03G27380 GM19G30350 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM03G27380 GM19G30350 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-1 | GR02G22570 | 1 | |
| Tree-based ortholog | 1-to-1 | GR02G22570 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR02G22570 | 1 | ||
| Lotus japonicus | Orthologous gene family | 1-to-1 | LJ1G056020 | 1 | |
| Tree-based ortholog | 1-to-1 | LJ1G056020 | 1 | ||
| Anchor point | N/A | LJ1G056020 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G056020 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-1 | MD00G192110 | 1 | |
| Tree-based ortholog | 1-to-many | MD00G192110 MD00G004590 MD00G219680 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MD00G192110 | 1 | ||
| Manihot esculenta | Orthologous gene family | 1-to-1 | ME01045G00040 | 1 | |
| Tree-based ortholog | 1-to-1 | ME01045G00040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME01045G00040 | 1 | ||
| Medicago truncatula | Orthologous gene family | 1-to-1 | MT7G088340 | 1 | |
| Tree-based ortholog | 1-to-1 | MT7G088340 | 1 | ||
| Anchor point | N/A | MT7G088340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT7G088340 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | 1-to-1 | OS01G17170 | 1 | |
| Tree-based ortholog | 1-to-1 | OS01G17170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS01G17170 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | 1-to-1 | OL14G03440 | 1 | |
| Tree-based ortholog | 1-to-1 | OL14G03440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL14G03440 | 1 | ||
| Physcomitrella patens | Orthologous gene family | 1-to-many | PP00097G01000 PP00239G00040 | 2 | |
| Tree-based ortholog | 1-to-many | PP00097G01000 PP00239G00040 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PP00239G00040 | 1 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-many | PT06G02730 PT16G02500 | 2 | |
| Tree-based ortholog | 1-to-many | PT16G02500 PT06G02730 | 2 | ||
| Anchor point | N/A | PT16G02500 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT06G02730 | 1 | ||
| Prunus persica | Orthologous gene family | 1-to-1 | PPE_007G00710 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_007G00710 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_007G00710 | 1 | ||
| Ricinus communis | Orthologous gene family | 1-to-1 | RC30045G00150 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30045G00150 | 1 | ||
| Anchor point | N/A | RC30045G00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30045G00150 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | 1-to-1 | SL10G077040 | 1 | |
| Tree-based ortholog | 1-to-1 | SL10G077040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL10G077040 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST10G019440 | 1 | |
| Tree-based ortholog | 1-to-1 | ST10G019440 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST10G019440 | 1 | ||
| Thellungiella parvula | Orthologous gene family | 1-to-1 | TP5G05650 | 1 | |
| Tree-based ortholog | 1-to-1 | TP5G05650 | 1 | ||
| Anchor point | N/A | TP5G05650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP5G05650 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0005G13150 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0005G13150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0005G13150 | 1 | ||
| Vitis vinifera | Orthologous gene family | 1-to-1 | VV08G04150 | 1 | |
| Tree-based ortholog | 1-to-1 | VV08G04150 | 1 | ||
| Anchor point | N/A | VV08G04150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV08G04150 | 1 | ||
| Zea mays | Orthologous gene family | 1-to-many | ZM03G09750 ZM08G00450 | 2 | |
| Tree-based ortholog | 1-to-many | ZM08G00450 ZM03G09750 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM08G00450 | 1 |