Gene: AT3G56940 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G56940
Transcript Identifier
AT3G56940.1
Gene Type
Coding gene
Location
3 : 21076594-21078269 : positive

Family

Gene family
HOM03D003660
(50 genes in 31 species)
specific family
Subfamily
ORTHO03D004279
(36 genes in 31 species)
specific family

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Descriptions

Description
dicarboxylate diiron protein, putative (Crd1)
Curated Summary
Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site.
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Identifiers

Identifier Name
aliasCHL27
aliasACSF
aliasCOPPER RESPONSE DEFECT 1
aliasCRD1
uniprotQ9M591

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006364RCAGene OntologyrRNA processing1
GO:0006636RCAGene Ontologyunsaturated fatty acid biosynthetic process1
GO:0009416RCAGene Ontologyresponse to light stimulus1
GO:0009657RCAGene Ontologyplastid organization1
GO:0010027RCAGene Ontologythylakoid membrane organization1
GO:0010207RCAGene Ontologyphotosystem II assembly1
GO:0015994RCAGene Ontologychlorophyll metabolic process1
GO:0019216RCAGene Ontologyregulation of lipid metabolic process1
GO:0019288RCAGene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1
GO:0019344RCAGene Ontologycysteine biosynthetic process1
GO:0031408RCAGene Ontologyoxylipin biosynthetic process1
GO:0009658IMPUniProtchloroplast organization1 2 3 4 5 6 7 8
GO:0015995IMP, IEA, UniProtchlorophyll biosynthetic process1 2 3 4 5 6 7 8
GO:1901401IMPUniProtregulation of tetrapyrrole metabolic process1 2 3 4 5 6 7 8
GO:0015979IEAUniProtphotosynthesis1 2 3 4 5 6 7
GO:0055114IEAInterProoxidation-reduction process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677TASUniProtDNA binding1 2 3 4 5 6 7 8
GO:0048529IMP, NASIEA, UniProtmagnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity1 2 3 4 5 6 7 8 9
GO:0016491IEAInterProoxidoreductase activity
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IDA, ISMGene Ontologychloroplast1 2
GO:0009941IDAGene Ontologychloroplast envelope1
GO:0009535IDAUniProtchloroplast thylakoid membrane1 2 3 4 5 6 7 8
GO:0009706IDAUniProtchloroplast inner membrane1 2 3 4 5 6 7 8
GO:0009534IDAGene Ontologychloroplast thylakoid1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009078Ferritin-like superfamily
IPR003251Rubrerythrin
IPR008434Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase

Mapman id Description
19.12tetrapyrrole synthesis.magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase
No SignalP domains detected for this gene.