Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AT3G07390
(Arabidopsis thaliana)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis thaliana | Orthologous gene family | AT3G07390 | 1 |  |
| Tree-based ortholog | AT3G07390 | 1 | ||
| Anchor point | AT3G25290 AT4G12980 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | AT3G07390 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00020G00080 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00020G00080 | 1 | ||
| Arabidopsis lyrata | Orthologous gene family | 1-to-1 | AL3G07780 | 1 | |
| Tree-based ortholog | 1-to-1 | AL3G07780 | 1 | ||
| Anchor point | many-to-1 | AL3G07780 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AL3G07780 | 1 | ||
| Beta vulgaris | Orthologous gene family | 1-to-1 | BV0G47760 | 1 | |
| Tree-based ortholog | 1-to-1 | BV0G47760 | 1 | ||
| Anchor point | many-to-1 | BV0G47760 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV0G47760 | 1 | ||
| Brassica rapa | Orthologous gene family | 1-to-many | BR03G30950 BR05G33920 | 2 | |
| Tree-based ortholog | 1-to-1 | BR03G30950 | 1 | ||
| Anchor point | many-to-many | BR03G30950 BR08G06260 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR05G33920 | 1 | ||
| Capsella rubella | Orthologous gene family | 1-to-1 | CRU_003G06600 | 1 | |
| Tree-based ortholog | 1-to-1 | CRU_003G06600 | 1 | ||
| Anchor point | many-to-many | CRU_003G06600 CRU_003G24670 CRU_007G28540 | 3 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_003G06600 | 1 | ||
| Carica papaya | Orthologous gene family | 1-to-1 | CP00008G00870 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00008G00870 | 1 | ||
| Anchor point | many-to-1 | CP00008G00860 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00008G00870 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR16G10860 | 1 | |
| Citrullus lanatus | Orthologous gene family | 1-to-1 | CL09G07890 | 1 | |
| Tree-based ortholog | 1-to-1 | CL09G07890 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL09G07890 | 1 | ||
| Citrus sinensis | Orthologous gene family | 1-to-1 | CS00057G00150 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00057G00150 | 1 | ||
| Anchor point | many-to-1 | CS00057G00150 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00057G00150 | 1 | ||
| Cucumis melo | Orthologous gene family | 1-to-1 | CM00046G01340 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00046G01340 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00046G01340 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | 1-to-many | EG0011G17340 EG0011G17350 | 2 | |
| Tree-based ortholog | 1-to-many | EG0011G17340 EG0011G17350 EG0008G06370 | 3 | ||
| Anchor point | many-to-many | EG0011G17340 EG0008G06340 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | EG0011G17340 EG0011G17350 | 2 | ||
| Fragaria vesca | Orthologous gene family | 1-to-1 | FV2G13630 | 1 | |
| Tree-based ortholog | 1-to-1 | FV2G13630 | 1 | ||
| Anchor point | many-to-1 | FV2G13620 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV2G13630 | 1 | ||
| Glycine max | Tree-based ortholog | 1-to-many | GM03G22260 GM16G09760 | 2 | |
| Anchor point | many-to-many | GM08G45940 GM03G22260 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM08G45940 GM18G30900 | 2 | ||
| Gossypium raimondii | Orthologous gene family | 1-to-many | GR00G01010 GR01G17630 | 2 | |
| Tree-based ortholog | 1-to-many | GR01G17630 GR09G40940 GR00G01010 ... | 4 | ||
| Anchor point | many-to-many | GR00G01010 GR01G10280 GR01G22930 ... | 4 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | GR00G01010 | 1 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ1G047560 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ1G047560 | 1 | ||
| Malus domestica | Orthologous gene family | 1-to-1 | MD10G011320 | 1 | |
| Tree-based ortholog | 1-to-many | MD00G471250 MD10G011320 MD00G233810 | 3 | ||
| Anchor point | many-to-many | MD05G016770 MD10G011300 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD10G011320 MD00G471250 | 2 | ||
| Manihot esculenta | Orthologous gene family | 1-to-many | ME07036G00150 ME07036G00160 | 2 | |
| Tree-based ortholog | 1-to-many | ME07036G00150 ME07036G00160 ME07036G00140 | 3 | ||
| Anchor point | many-to-many | ME07036G00130 ME06158G00330 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ME07036G00150 ME07036G00160 | 2 | ||
| Medicago truncatula | Tree-based ortholog | 1-to-1 | MT8G011650 | 1 | |
| Anchor point | many-to-1 | MT8G011650 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT8G011650 | 1 | ||
| Oryza sativa ssp. japonica | Tree-based ortholog | 1-to-1 | OS08G41290 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G41290 | 1 | ||
| Physcomitrella patens | Tree-based ortholog | 1-to-many | PP00057G00520 PP00310G00020 PP00381G00010 ... | 5 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00191G00580 PP00057G00520 PP00310G00020 ... | 5 | ||
| Populus trichocarpa | Orthologous gene family | 1-to-1 | PT02G24920 | 1 | |
| Tree-based ortholog | 1-to-1 | PT02G24920 | 1 | ||
| Anchor point | many-to-1 | PT02G24920 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PT02G24920 | 1 | ||
| Prunus persica | Tree-based ortholog | 1-to-many | PPE_008G20860 PPE_008G20870 PPE_007G23050 ... | 4 | |
| Anchor point | many-to-1 | PPE_008G20850 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PPE_008G20870 PPE_008G20860 | 2 | ||
| Ricinus communis | Tree-based ortholog | 1-to-1 | RC28708G00120 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC28708G00120 | 1 | ||
| Solanum lycopersicum | Tree-based ortholog | 1-to-1 | SL06G083140 | 1 | |
| Anchor point | many-to-1 | SL09G056360 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL09G097890 | 1 | ||
| Solanum tuberosum | Orthologous gene family | 1-to-1 | ST09G013710 | 1 | |
| Tree-based ortholog | 1-to-many | ST06G033570 ST09G013710 | 2 | ||
| Anchor point | many-to-many | ST09G013710 ST06G033570 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | ST09G013710 ST06G033570 | 2 | ||
| Thellungiella parvula | Tree-based ortholog | 1-to-many | TP3G22920 TP7G09990 | 2 | |
| Anchor point | many-to-many | TP7G09990 TP3G22920 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP3G06320 | 1 | ||
| Theobroma cacao | Orthologous gene family | 1-to-1 | TC0001G20790 | 1 | |
| Tree-based ortholog | 1-to-1 | TC0001G20790 | 1 | ||
| Anchor point | many-to-1 | TC0001G20770 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0001G20790 | 1 | ||
| Vitis vinifera | Tree-based ortholog | 1-to-1 | VV05G10410 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV05G10410 | 1 | ||
| Zea mays | Tree-based ortholog | 1-to-many | ZM01G33400 ZM04G09530 ZM01G39520 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G39520 | 1 |