Expansion plot
Gene family finder
Ks-graphs
Skyline plot
Synteny plot
WGDotplot
Functional clusters
WGMapping
BLAST
Workbench
Integrative Orthology Viewer:
AL1G18700
(Arabidopsis lyrata)
Inparalogs
| Organism | Source | Genes | #genes | Details |
|---|---|---|---|---|
| Arabidopsis lyrata | Orthologous gene family | AL1G18700 AL3G21030 | 2 |  |
| Tree-based ortholog | AL1G18700 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | AL1G18700 | 1 |
Orthologs
| Organism | Source | Type | Genes | #genes | Details |
|---|---|---|---|---|---|
| Amborella trichopoda | Tree-based ortholog | 1-to-1 | ATR_00019G02150 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ATR_00051G00580 | 1 | ||
| Arabidopsis thaliana | Orthologous gene family | many-to-many | AT1G17745 AT3G19480 | 2 | |
| Tree-based ortholog | 1-to-1 | AT1G17745 | 1 | ||
| Anchor point | N/A | AT1G17745 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | AT1G17745 | 1 | ||
| Beta vulgaris | Orthologous gene family | many-to-1 | BV8G13880 | 1 | |
| Tree-based ortholog | 1-to-1 | BV8G13880 | 1 | ||
| Anchor point | N/A | BV8G13880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BV8G13880 | 1 | ||
| Brassica rapa | Orthologous gene family | many-to-many | BR03G35920 BR08G14090 BR08G26370 | 3 | |
| Tree-based ortholog | 1-to-1 | BR08G26370 | 1 | ||
| Anchor point | N/A | BR08G26370 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | BR08G26370 | 1 | ||
| Capsella rubella | Orthologous gene family | many-to-many | CRU_001G16690 CRU_003G18410 | 2 | |
| Tree-based ortholog | 1-to-1 | CRU_001G16690 | 1 | ||
| Anchor point | N/A | CRU_001G16690 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CRU_001G16690 | 1 | ||
| Carica papaya | Orthologous gene family | many-to-1 | CP00375G00040 | 1 | |
| Tree-based ortholog | 1-to-1 | CP00375G00040 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CP00375G00040 | 1 | ||
| Chlamydomonas reinhardtii | Tree-based ortholog | 1-to-1 | CR07G07710 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CR07G07710 | 1 | ||
| Citrullus lanatus | Orthologous gene family | many-to-1 | CL07G12010 | 1 | |
| Tree-based ortholog | 1-to-1 | CL07G12010 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CL07G12010 | 1 | ||
| Citrus sinensis | Orthologous gene family | many-to-1 | CS00729G00080 | 1 | |
| Tree-based ortholog | 1-to-1 | CS00729G00080 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CS00729G00080 | 1 | ||
| Cucumis melo | Orthologous gene family | many-to-1 | CM00083G00050 | 1 | |
| Tree-based ortholog | 1-to-1 | CM00083G00050 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | CM00083G00050 | 1 | ||
| Eucalyptus grandis | Orthologous gene family | many-to-many | EG0003G25390 EG0004G16310 EG0005G05410 ... | 5 | |
| Tree-based ortholog | 1-to-1 | EG0006G34170 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | EG0006G34170 | 1 | ||
| Fragaria vesca | Orthologous gene family | many-to-1 | FV0G18750 | 1 | |
| Tree-based ortholog | 1-to-1 | FV0G18750 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | FV0G18750 | 1 | ||
| Glycine max | Orthologous gene family | many-to-many | GM07G00540 GM08G23860 | 2 | |
| Tree-based ortholog | 1-to-many | GM08G23860 GM07G00540 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GM07G00540 GM08G23860 | 2 | ||
| Gossypium raimondii | Tree-based ortholog | 1-to-many | GR12G14910 GR13G04690 GR08G02330 ... | 4 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | GR13G04690 GR08G02330 | 2 | ||
| Lotus japonicus | Tree-based ortholog | 1-to-1 | LJ5G037170 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | LJ5G037170 | 1 | ||
| Malus domestica | Orthologous gene family | many-to-1 | MD17G012690 | 1 | |
| Tree-based ortholog | 1-to-many | MD09G012350 MD17G012690 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | MD09G012350 MD17G012690 | 2 | ||
| Manihot esculenta | Tree-based ortholog | 1-to-1 | ME01361G00010 | 1 | |
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ME04205G00040 | 1 | ||
| Medicago truncatula | Orthologous gene family | many-to-1 | MT4G005880 | 1 | |
| Tree-based ortholog | 1-to-1 | MT4G005880 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | MT4G005880 | 1 | ||
| Oryza sativa ssp. japonica | Orthologous gene family | many-to-many | OS04G55720 OS06G44460 OS08G34720 | 3 | |
| Tree-based ortholog | 1-to-1 | OS06G44460 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OS08G34720 | 1 | ||
| Ostreococcus lucimarinus | Orthologous gene family | many-to-1 | OL16G00840 | 1 | |
| Tree-based ortholog | 1-to-many | OL05G01380 OL10G01490 OL11G01810 ... | 5 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | OL10G01490 | 1 | ||
| Physcomitrella patens | Orthologous gene family | many-to-many | PP00011G01600 PP00087G00450 PP11232G00010 | 3 | |
| Tree-based ortholog | 1-to-1 | PP00002G02510 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PP00087G00450 PP00011G01600 | 2 | ||
| Populus trichocarpa | Orthologous gene family | many-to-many | PT08G00950 PT10G24960 PT14G02280 | 3 | |
| Tree-based ortholog | 1-to-many | PT08G00950 PT10G24960 | 2 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-many | PT08G00950 PT10G24960 | 2 | ||
| Prunus persica | Orthologous gene family | many-to-1 | PPE_003G14990 | 1 | |
| Tree-based ortholog | 1-to-1 | PPE_003G14990 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | PPE_003G14990 | 1 | ||
| Ricinus communis | Orthologous gene family | many-to-1 | RC30158G00100 | 1 | |
| Tree-based ortholog | 1-to-1 | RC30158G00100 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | RC30158G00100 | 1 | ||
| Solanum lycopersicum | Orthologous gene family | many-to-1 | SL03G123830 | 1 | |
| Tree-based ortholog | 1-to-1 | SL03G123830 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | SL03G123830 | 1 | ||
| Solanum tuberosum | Orthologous gene family | many-to-1 | ST03G034130 | 1 | |
| Tree-based ortholog | 1-to-1 | ST03G034130 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ST03G034130 | 1 | ||
| Thellungiella parvula | Orthologous gene family | many-to-many | TP1G15820 TP3G17530 | 2 | |
| Tree-based ortholog | 1-to-1 | TP1G15820 | 1 | ||
| Anchor point | N/A | TP1G15820 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TP1G15820 | 1 | ||
| Theobroma cacao | Orthologous gene family | many-to-many | TC0002G10320 TC0006G01680 | 2 | |
| Tree-based ortholog | 1-to-1 | TC0006G01680 | 1 | ||
| Anchor point | N/A | TC0006G01680 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | TC0006G01680 | 1 | ||
| Vitis vinifera | Orthologous gene family | many-to-1 | VV18G06640 | 1 | |
| Tree-based ortholog | 1-to-1 | VV09G01260 | 1 | ||
| Anchor point | N/A | VV18G13790 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | VV18G06640 | 1 | ||
| Zea mays | Orthologous gene family | many-to-many | ZM01G37680 ZM02G02310 ZM09G16640 ... | 4 | |
| Tree-based ortholog | 1-to-1 | ZM09G16640 | 1 | ||
| Best-Hits-and-Inparalogs(BHI)family | 1-to-1 | ZM01G37680 | 1 |