PLAZA 3.0 Dicots gene overview : AL3G21030

Gene: AL3G21030 (Arabidopsis lyrata)

Overview

Gene Identifier: AL3G21030
Transcript Identifier: AL3G21030.1
Gene Type: Coding gene
Location: scaffold_3 : 8417242-8419303 : positive

Family

Gene family: HOM03D000650
(210 genes in 31 species)
specific family
Subfamily: ORTHO03D001648
(47 genes in 26 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description (AnnoMine): D-3-phosphoglycerate dehydrogenase

Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier	Name
pid	479462
GeneName	g479462
id	PAC:16050697

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0008152	IEA	Genome Project	metabolic process
GO:0055114	IEA	Genome Project	oxidation-reduction process
GO:0006564	IEA	Genome Project	L-serine biosynthetic process

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0016616	IEA	Genome Project	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287	IEA	Genome Project	NAD binding
GO:0016597	IEA	Genome Project	amino acid binding
GO:0048037	IEA	Genome Project	cofactor binding
GO:0004617	IEA	Genome Project	phosphoglycerate dehydrogenase activity
GO:0016614	IEA	PLAZA Homology	oxidoreductase activity, acting on CH-OH group of donors	HOM03D000650

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0009570	ISO	PLAZA Integrative Orthology	chloroplast stroma	AT3G19480
GO:0005739	ISO	PLAZA Integrative Orthology	mitochondrion	AT3G19480
GO:0009507	ISO	PLAZA Integrative Orthology	chloroplast	AT3G19480

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR006140	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
IPR006139	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
IPR015878	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
IPR016040	NAD(P)-binding domain
IPR006236	D-3-phosphoglycerate dehydrogenase
IPR002912	ACT domain

Mapman id	Description
13.1.5.1.1	amino acid metabolism.synthesis.serine-glycine-cysteine group.serine.phosphoglycerate dehydrogenase

No SignalP domains detected for this gene.