Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
gene16813	Selaginella moellendorffii	HOM04x5M006576	ORTHO04x5M008432	6.5e-58	225.7	105	100.0
gene4641	Selaginella moellendorffii	HOM04x5M006576	ORTHO04x5M008432	9.4e-57	221.9	105	98.1
Potri.003G173000	Populus trichocarpa	HOM04x5M006576	ORTHO04x5M008432	1.5e-14	81.6	85	43.5
GSVIVG01010482001	Vitis vinifera	HOM04x5M006576	ORTHO04x5M008432	2.0e-14	81.3	80	45.0
Potri.001G055400	Populus trichocarpa	HOM04x5M006576	ORTHO04x5M008432	2.6e-14	80.9	85	42.4
ASH_gene6348	Apostasia shenzhenica	HOM04x5M006576	ORTHO04x5M008432	4.4e-14	80.1	93	41.9
Zosma68g00090	Zostera marina	HOM04x5M006576	ORTHO04x5M008432	2.9e-13	77.4	88	40.9
PEQU_13003	Phalaenopsis equestris	HOM04x5M006576	ORTHO04x5M008432	1.1e-12	75.5	80	43.8
evm.TU.AsparagusV1_03.1508.V1.1	Asparagus officinalis	HOM04x5M000002	ORTHO04x5M001986	4.1e-12	73.6	85	38.8
Mapoly0011s0010	Marchantia polymorpha	HOM04x5M006576	ORTHO04x5M008432	5.4e-12	73.2	78	43.6
PH01000753G0680	Phyllostachys edulis	HOM04x5M006576	ORTHO04x5M008432	5.4e-12	73.2	93	38.7
Aco017445	Ananas comosus	HOM04x5M006576	ORTHO04x5M008432	7.0e-12	72.8	80	37.5
ATR0582G290	Amborella trichopoda	HOM04x5M006576	ORTHO04x5M008432	9.2e-12	72.4	85	38.8
Spipo18G0025100	Spirodela polyrhiza	HOM04x5M006576	ORTHO04x5M008432	1.2e-11	72.0	84	39.3
AT1G67350	Arabidopsis thaliana	HOM04x5M006576	ORTHO04x5M008432	2.1e-11	71.2	85	38.8
Pp3c3_5450	Physcomitrium patens	HOM04x5M006576	ORTHO04x5M008432	2.1e-11	71.2	80	41.2
Pgl_GLEAN_10008459	Cenchrus americanus	HOM04x5M006576	ORTHO04x5M008432	2.7e-11	70.9	80	41.2
Seita.9G136800	Setaria italica	HOM04x5M006576	ORTHO04x5M008432	2.7e-11	70.9	80	40.0
LOC_Os03g48110	Oryza sativa ssp. japonica	HOM04x5M006576	ORTHO04x5M008432	4.6e-11	70.1	80	40.0
OsR498G0306819300.01	Oryza sativa ssp. indica	HOM04x5M006576	ORTHO04x5M008432	4.6e-11	70.1	80	40.0
Zm00001d025423	Zea mays B73	HOM04x5M006576	ORTHO04x5M008432	4.6e-11	70.1	80	40.0
Zm00007a00001051	Zea mays B104	HOM04x5M006576	ORTHO04x5M008432	4.6e-11	70.1	80	40.0
Zm00001d033530	Zea mays B73	HOM04x5M006576	ORTHO04x5M008432	6.0e-11	69.7	80	38.8
Zm00007a00047469	Zea mays B104	HOM04x5M006576	ORTHO04x5M008432	6.0e-11	69.7	80	38.8
Misin01G123100	Miscanthus sinensis	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Misin02G111200	Miscanthus sinensis	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Sobic.001G134200	Sorghum bicolor	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Sspon.01G0056450-1C	Saccharum spontaneum	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Sspon.01G0047410-1B	Saccharum spontaneum	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Sspon.01G0056450-2D	Saccharum spontaneum	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Zm00001d033531	Zea mays B73	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Zm00001d038441	Zea mays B73	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	40.0
Zm00007a00048830	Zea mays B104	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Zm00007a00036979	Zea mays B104	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	40.0
Zm00008a004836	Zea mays PH207	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
Zm00008a004835	Zea mays PH207	HOM04x5M006576	ORTHO04x5M008432	7.8e-11	69.3	80	38.8
OB03G37130	Oryza brachyantha	HOM04x5M006576	ORTHO04x5M008432	1.0e-10	68.9	80	40.0
Bradi1g12210	Brachypodium distachyon	HOM04x5M006576	ORTHO04x5M008432	1.7e-10	68.2	80	38.8
HORVU2Hr1G033130	Hordeum vulgare	HOM04x5M006576	ORTHO04x5M008432	3.9e-10	67.0	80	37.5
Oropetium_20150105_08167	Oropetium thomaeum	HOM04x5M006576	ORTHO04x5M008432	5.0e-10	66.6	79	38.0
TraesCS4B02G029000	Triticum aestivum	HOM04x5M006576	ORTHO04x5M008432	5.0e-10	66.6	80	36.2
TRITD4Bv1G008260	Triticum turgidum	HOM04x5M006576	ORTHO04x5M008432	5.0e-10	66.6	80	36.2
Zjn_sc00013.1.g00570.1.am.mk	Zoysia japonica ssp. nagirizaki	HOM04x5M006576	ORTHO04x5M008432	5.0e-10	66.6	79	38.0
TraesCS4A02G284100	Triticum aestivum	HOM04x5M006576	ORTHO04x5M008432	6.6e-10	66.2	80	37.5
TRITD4Av1G198850	Triticum turgidum	HOM04x5M006576	ORTHO04x5M008432	6.6e-10	66.2	80	37.5
Zm00008a037912	Zea mays PH207	HOM04x5M006576	ORTHO04x5M008432	1.5e-09	65.1	80	38.8
Ma05_g14970	Musa acuminata	HOM04x5M006576	ORTHO04x5M008432	1.9e-09	64.7	80	37.5

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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