Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
Aco005168	Ananas comosus	HOM04x5M004721	ORTHO04x5M005760	3.1e-149	530.4	260	100.0
Ma04_g34980	Musa acuminata	HOM04x5M004721	ORTHO04x5M005760	1.1e-103	379.0	258	70.9
Ma07_g01460	Musa acuminata	HOM04x5M004721	ORTHO04x5M005760	9.0e-101	369.4	258	69.4
evm.TU.AsparagusV1_07.3306.V1.1	Asparagus officinalis	HOM04x5M004721	ORTHO04x5M005760	1.2e-97	359.0	257	70.8
p5.00_sc00237_p0007	Elaeis guineensis	HOM04x5M004721	ORTHO04x5M005760	4.1e-93	344.0	258	68.2
Sspon.03G0030250-2C	Saccharum spontaneum	HOM04x5M004721	ORTHO04x5M005760	6.9e-93	343.2	236	74.2
Sspon.03G0030250-3D	Saccharum spontaneum	HOM04x5M004721	ORTHO04x5M005760	6.9e-93	343.2	236	74.2
LOC_Os01g56560	Oryza sativa ssp. japonica	HOM04x5M004721	ORTHO04x5M005760	1.5e-92	342.0	243	69.5
Sobic.003G311700	Sorghum bicolor	HOM04x5M004721	ORTHO04x5M005760	2.0e-92	341.7	234	73.9
Sspon.03G0030250-1B	Saccharum spontaneum	HOM04x5M004721	ORTHO04x5M005760	2.0e-92	341.7	237	74.3
Zm00001d012647	Zea mays B73	HOM04x5M004721	ORTHO04x5M005760	3.4e-92	340.9	238	72.7
Zm00007a00034758	Zea mays B104	HOM04x5M004721	ORTHO04x5M005760	3.4e-92	340.9	238	72.7
Seita.5G335400	Setaria italica	HOM04x5M004721	ORTHO04x5M005760	5.9e-92	340.1	244	72.1
MisinT243200	Miscanthus sinensis	HOM04x5M004721	ORTHO04x5M005760	1.7e-91	338.6	236	72.9
Oropetium_20150105_12666	Oropetium thomaeum	HOM04x5M004721	ORTHO04x5M005760	1.7e-91	338.6	218	75.7
Misin05G286900	Miscanthus sinensis	HOM04x5M004721	ORTHO04x5M005760	2.2e-91	338.2	237	73.4
Bradi2g51350	Brachypodium distachyon	HOM04x5M004721	ORTHO04x5M005760	5.0e-91	337.0	244	68.4
TraesCS3D02G308100	Triticum aestivum	HOM04x5M004721	ORTHO04x5M005760	1.1e-90	335.9	247	68.8
TraesCS3B02G342400	Triticum aestivum	HOM04x5M004721	ORTHO04x5M005760	2.5e-90	334.7	247	68.4
TRITD3Bv1G182300	Triticum turgidum	HOM04x5M004721	ORTHO04x5M005760	2.5e-90	334.7	247	68.4
TRITD3Av1G196590	Triticum turgidum	HOM04x5M004721	ORTHO04x5M005760	9.4e-90	332.8	247	68.4
Zm00001d043307	Zea mays B73	HOM04x5M004721	ORTHO04x5M005760	1.0e-88	329.3	237	71.3
Zm00007a00018732	Zea mays B104	HOM04x5M004721	ORTHO04x5M005760	1.0e-88	329.3	237	71.3
Zm00008a013697	Zea mays PH207	HOM04x5M004721	ORTHO04x5M005760	1.0e-88	329.3	237	71.3
HORVU3Hr1G075470	Hordeum vulgare	HOM04x5M004721	ORTHO04x5M005760	1.4e-88	328.9	240	68.3
CALSI_Maker00043301	Calamus simplicifolius	HOM04x5M004721	ORTHO04x5M005760	2.5e-87	324.7	258	64.3
Potri.002G126000	Populus trichocarpa	HOM04x5M004721	ORTHO04x5M005760	6.9e-85	316.6	217	70.5
Solyc04g078890.2	Solanum lycopersicum	HOM04x5M004721	ORTHO04x5M005760	1.4e-82	308.9	260	61.9
ASH_gene1415	Apostasia shenzhenica	HOM04x5M004721	ORTHO04x5M005760	9.4e-82	306.2	261	61.7
GSVIVG01024177001	Vitis vinifera	HOM04x5M004721	ORTHO04x5M005760	2.1e-81	305.1	170	83.5
GSVIVG01009491001	Vitis vinifera	HOM04x5M004721	ORTHO04x5M005760	2.0e-79	298.5	231	65.8
Zm00008a033132	Zea mays PH207	HOM04x5M004721	ORTHO04x5M005760	1.1e-77	292.7	150	91.3
OsR498G0102072700.01	Oryza sativa ssp. indica	HOM04x5M004721	ORTHO04x5M005760	3.1e-77	291.2	152	87.5
OB01G41480	Oryza brachyantha	HOM04x5M004721	ORTHO04x5M005760	7.0e-77	290.0	152	87.5
AT4G17650	Arabidopsis thaliana	HOM04x5M004721	ORTHO04x5M005760	2.6e-76	288.1	261	57.5
Zosma116g00680	Zostera marina	HOM04x5M004721	ORTHO04x5M005760	4.2e-74	280.8	255	59.2
HORVU3Hr1G075500	Hordeum vulgare	HOM04x5M004721	ORTHO04x5M005760	1.2e-73	279.3	152	82.9
HORVU2Hr1G054080	Hordeum vulgare	HOM04x5M004721	ORTHO04x5M005760	1.2e-73	279.3	155	81.3
PH01000775G0040	Phyllostachys edulis	HOM04x5M004721	ORTHO04x5M005760	2.0e-71	271.9	218	65.1
Spipo24G0028700	Spirodela polyrhiza	HOM04x5M004721	ORTHO04x5M005760	9.1e-69	263.1	147	81.0
Mapoly0004s0036	Marchantia polymorpha	HOM04x5M004721	ORTHO04x5M005760	1.5e-58	229.2	169	62.1
gene8764	Selaginella moellendorffii	HOM04x5M004721	ORTHO04x5M005760	4.2e-58	227.6	191	58.1
gene35302	Selaginella moellendorffii	HOM04x5M004721	ORTHO04x5M005760	2.1e-57	225.3	191	57.6
Pp3c21_16730	Physcomitrium patens	HOM04x5M004721	ORTHO04x5M005760	3.6e-57	224.6	169	62.7
PEQU_00089	Phalaenopsis equestris	HOM04x5M004721	ORTHO04x5M005760	2.4e-53	211.8	115	83.5
Pp3c22_1290	Physcomitrium patens	HOM04x5M004721	ORTHO04x5M005760	5.9e-52	207.2	245	46.1
HORVU3Hr1G075510	Hordeum vulgare	HOM04x5M004721	ORTHO04x5M005760	5.7e-47	190.7	173	59.0
Sspon.03G0030250-1P	Saccharum spontaneum	HOM04x5M004721	ORTHO04x5M005760	1.3e-46	189.5	152	67.1
TraesCS3A02G295000	Triticum aestivum	HOM04x5M004721	ORTHO04x5M005760	2.4e-45	185.3	162	61.7
Misin08G070100	Miscanthus sinensis	HOM04x5M004721	ORTHO04x5M005760	2.7e-44	181.8	151	64.2
Zjn_sc00040.1.g01280.1.am.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004721	ORTHO04x5M005760	5.9e-44	180.6	154	61.7
Zjn_sc00009.1.g10440.1.sm.mkhc	Zoysia japonica ssp. nagirizaki	HOM04x5M004721	ORTHO04x5M005760	2.0e-39	165.6	95	83.2
Misin02G227800	Miscanthus sinensis	HOM04x5M004721	ORTHO04x5M005760	1.1e-37	159.8	88	83.0
PAB00011525	Picea abies	HOM04x5M004721	ORTHO04x5M005760	1.9e-34	149.1	90	76.7
PEQU_00095	Phalaenopsis equestris	HOM04x5M004721	ORTHO04x5M005760	6.8e-32	140.6	84	78.6
PAB00008017	Picea abies	HOM04x5M004721	ORTHO04x5M005760	1.1e-29	133.3	81	71.6
Pgl_GLEAN_10014801	Cenchrus americanus	HOM04x5M004721	ORTHO04x5M005760	3.2e-29	131.7	67	88.1
Cre07.g345700	Chlamydomonas reinhardtii	HOM04x5M004721	ORTHO04x5M005760	7.8e-28	127.1	211	32.2
MCO12G423	Micromonas commoda	HOM04x5M004721	ORTHO04x5M005760	6.8e-24	114.0	141	38.3

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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