Monocots PLAZA 4.5 : Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time could be too to stall the browser.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

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Genes

Gene ID	Organism	Homologous gene family	Orthologous gene family	E-value	Bitscore	Alignment Length	Identity Percentage
AT4G33740	Arabidopsis thaliana	HOM04x5M008324	ORTHO04x5M002360	9.5e-157	556.2	473	100.0
Potri.009G083900	Populus trichocarpa	HOM04x5M008324	ORTHO04x5M002360	2.3e-14	83.2	76	61.8
Solyc01g106680.2	Solanum lycopersicum	HOM04x5M008324	ORTHO04x5M002360	8.9e-14	81.3	74	59.5
Potri.001G288800	Populus trichocarpa	HOM04x5M008324	ORTHO04x5M002360	1.2e-13	80.9	76	59.2
Potri.T131300	Populus trichocarpa	HOM04x5M008324	ORTHO04x5M002360	1.2e-13	80.9	76	59.2
GSVIVG01037020001	Vitis vinifera	HOM04x5M008324	ORTHO04x5M002360	1.5e-13	80.5	86	53.5
Potri.007G008600	Populus trichocarpa	HOM04x5M008324	ORTHO04x5M002360	4.4e-13	79.0	77	55.8
ASH_gene1321	Apostasia shenzhenica	HOM04x5M008324	ORTHO04x5M002360	1.1e-11	74.3	74	48.6
AT4G37820	Arabidopsis thaliana	HOM04x5M008324	ORTHO04x5M002360	1.1e-11	74.3	83	49.4
GSVIVG01006594001	Vitis vinifera	HOM04x5M008324	ORTHO04x5M002360	4.1e-11	72.4	79	49.4
AT2G22795	Arabidopsis thaliana	HOM04x5M008324	ORTHO04x5M002360	1.2e-10	70.9	77	49.4
Solyc02g091890.1	Solanum lycopersicum	HOM04x5M008324	ORTHO04x5M002360	1.2e-10	70.9	76	46.1
Ma04_g14580	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	2.1e-10	70.1	77	40.3
Spipo2G0107900	Spirodela polyrhiza	HOM04x5M008324	ORTHO04x5M002360	2.1e-10	70.1	77	45.5
CALSI_Maker00032507	Calamus simplicifolius	HOM04x5M007957	ORTHO04x5M002360	3.5e-10	69.3	74	47.3
Ma06_g26280	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	4.6e-10	68.9	74	44.6
Ma04_g29620	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	7.8e-10	68.2	77	48.1
PEQU_38707	Phalaenopsis equestris	HOM04x5M018050	ORTHO04x5M002360	1.0e-09	67.8	74	45.9
PEQU_40201	Phalaenopsis equestris	HOM04x5M018050	ORTHO04x5M002360	1.0e-09	67.8	74	45.9
PEQU_04316	Phalaenopsis equestris	HOM04x5M018050	ORTHO04x5M002360	1.0e-09	67.8	74	45.9
Ma07_g00760	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	1.3e-09	67.4	77	48.1
Zosma256g00090	Zostera marina	HOM04x5M008324	ORTHO04x5M002360	3.0e-09	66.2	73	43.8
Ma05_g08480	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	5.1e-09	65.5	74	44.6
p5.00_sc00030_p0079	Elaeis guineensis	HOM04x5M014735	ORTHO04x5M002360	1.5e-08	63.9	73	46.6
p5.00_sc00030_p0078	Elaeis guineensis	HOM04x5M014735	ORTHO04x5M002360	1.5e-08	63.9	73	46.6
p5.00_sc00029_p0056	Elaeis guineensis	HOM04x5M014735	ORTHO04x5M002360	1.9e-08	63.5	73	43.8
CALSI_Maker00028026	Calamus simplicifolius	HOM04x5M008324	ORTHO04x5M002360	3.3e-08	62.8	74	44.6
p5.00_sc00011_p0111	Elaeis guineensis	HOM04x5M007957	ORTHO04x5M002360	4.3e-08	62.4	74	44.6
Aco008620	Ananas comosus	HOM04x5M008324	ORTHO04x5M002360	7.3e-08	61.6	74	44.6
Ma04_g07380	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	1.2e-07	60.8	80	33.8
CALSI_Maker00025708	Calamus simplicifolius	HOM04x5M014735	ORTHO04x5M002360	2.1e-07	60.1	53	50.9
CALSI_Maker00008115	Calamus simplicifolius	HOM04x5M014735	ORTHO04x5M002360	2.1e-07	60.1	53	50.9
Pgl_GLEAN_10023773	Cenchrus americanus	HOM04x5M007957	ORTHO04x5M002360	3.6e-07	59.3	78	43.6
Zosma9g01370	Zostera marina	HOM04x5M008324	ORTHO04x5M002360	4.7e-07	58.9	78	42.3
Ma04_g34830	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	6.2e-07	58.5	45	55.6
ATR0767G056	Amborella trichopoda	HOM04x5M007957	ORTHO04x5M002360	8.1e-07	58.2	73	47.9
Misin01G096000	Miscanthus sinensis	HOM04x5M007957	ORTHO04x5M002360	1.1e-06	57.8	77	44.2
Ma01_g07820	Musa acuminata	HOM04x5M008324	ORTHO04x5M002360	1.8e-06	57.0	50	48.0
Seita.9G110100	Setaria italica	HOM04x5M007957	ORTHO04x5M002360	1.8e-06	57.0	78	42.3
PH01001135G0150	Phyllostachys edulis	HOM04x5M007957	ORTHO04x5M002360	3.1e-06	56.2	78	43.6
Potri.002G112800	Populus trichocarpa	HOM04x5M008324	ORTHO04x5M002360	4.0e-06	55.8	80	43.8
Bradi1g10120	Brachypodium distachyon	HOM04x5M007957	ORTHO04x5M002360	5.2e-06	55.5	80	38.8
CALSI_Maker00026955	Calamus simplicifolius	HOM04x5M012428	ORTHO04x5M002360	5.2e-06	55.5	49	53.1
CALSI_Maker00039297	Calamus simplicifolius	HOM04x5M012428	ORTHO04x5M002360	5.2e-06	55.5	49	53.1
OB03G39700	Oryza brachyantha	HOM04x5M007957	ORTHO04x5M002360	6.8e-06	55.1	77	42.9
PAB00049911	Picea abies	HOM04x5M008324	ORTHO04x5M002360	6.8e-06	55.1	64	50.0
LOC_Os03g51640	Oryza sativa ssp. japonica	HOM04x5M007957	ORTHO04x5M002360	8.9e-06	54.7	77	41.6
OsR498G0306972700.01	Oryza sativa ssp. indica	HOM04x5M007957	ORTHO04x5M002360	8.9e-06	54.7	77	41.6
Oropetium_20150105_07417	Oropetium thomaeum	HOM04x5M007957	ORTHO04x5M002360	8.9e-06	54.7	75	42.7

External Sequences (optional)

External Sequences Type

Program Settings

MSA algorithm
Tree construction algorithm
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