Functional clusters

Information

  • Type InterPro
  • Description RNA recognition motif domain

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Brassica carinata ChrC05 5 CH_bca_1012 6 11 0.00000782518
Brassica napus C09 5 CH_bna_1324 4 4 0.000422229
Brassica napus A10 5 CH_bna_687 5 5 0.00000333094
Coffea canephora chr1 5 CH_ccan_620 3 5 0.000419657
Capsella rubella scaffold_2 5 CH_cru_557 4 4 0.000235555
Daucus carota DCARv2_Chr6 5 CH_dca_583 4 4 0.00036404
Erigeron canadensis Conyza_canadensis_scaffold:6 5 CH_eca_781 7 45 0.00048363
Eucalyptus grandis Chr08 5 CH_egr_1228 4 5 0.000240207
Fragaria vesca Fvb7 5 CH_fve_670 6 21 0.000212715
Glycine max Gm11 5 CH_gma_774 4 4 0.000274115
Glycine max Gm04 5 CH_gma_775 4 4 0.000274115
Glycine max Gm06 5 CH_gma_776 4 4 0.000274115
Lupinus albus Lalb_Chr08 5 CH_lal_653 4 4 0.000366983
Physcomitrium patens Chr09 5 CH_ppa_431 4 6 0.00093768
Quercus lobata 6 5 CH_qlo_1346 4 4 0.0000894096
Sequoiadendron giganteum chr1 5 CH_sgi_1285 5 6 0.00000110849
Sequoiadendron giganteum chr2 5 CH_sgi_2505 4 6 0.000517323
Sapria himalayana scaffold34_6262321 5 CH_shi_446 5 16 0.00022763
Solanum lycopersicum SL4.0ch06 5 CH_sly_68 10 10 2.23688e-17
Solanum pennellii Spenn-ch06 5 CH_spe_180 6 6 0.00000000222778
Trochodendron aralioides group12 5 CH_tar_728 8 38 0.000215725
Trochodendron aralioides group9 5 CH_tar_828 4 4 0.00045184
Brassica carinata ChrC05 6 CH_bca_1012 6 11 0.00000782518
Brassica napus C09 6 CH_bna_1324 4 4 0.000422229
Brassica napus A10 6 CH_bna_687 5 5 0.00000333094
Coffea canephora chr1 6 CH_ccan_620 3 5 0.000419657
Capsella rubella scaffold_2 6 CH_cru_557 4 4 0.000235555
Daucus carota DCARv2_Chr6 6 CH_dca_583 4 4 0.00036404
Erigeron canadensis Conyza_canadensis_scaffold:6 6 CH_eca_781 7 45 0.00048363
Eucalyptus grandis Chr08 6 CH_egr_1228 4 5 0.000240207
Fragaria vesca Fvb7 6 CH_fve_670 6 21 0.000212715
Glycine max Gm11 6 CH_gma_774 4 4 0.000274115
Glycine max Gm04 6 CH_gma_775 4 4 0.000274115
Glycine max Gm06 6 CH_gma_776 4 4 0.000274115
Lupinus albus Lalb_Chr08 6 CH_lal_653 4 4 0.000366983
Physcomitrium patens Chr09 6 CH_ppa_431 4 6 0.00093768
Quercus lobata 6 6 CH_qlo_1346 4 4 0.0000894096
Sequoiadendron giganteum chr1 6 CH_sgi_1285 5 6 0.00000110849
Sequoiadendron giganteum chr2 6 CH_sgi_2505 4 6 0.000517323
Sapria himalayana scaffold34_6262321 6 CH_shi_446 5 16 0.00022763
Solanum lycopersicum SL4.0ch06 6 CH_sly_68 10 10 2.23688e-17
Solanum pennellii Spenn-ch06 6 CH_spe_180 6 6 0.00000000222778
Trochodendron aralioides group12 6 CH_tar_728 8 38 0.000215725
Trochodendron aralioides group9 6 CH_tar_828 4 4 0.00045184

Available child term results

Ontology identifier Description Number of clusters
IPR007846 RNA-recognition motif (RRM) Nup35-type domain 8
IPR021790 PTBP1, RNA recognition motif 2-like 2
IPR033744 RBM8, RNA recognition motif 4
IPR034131 DAZ-associated protein 1, RNA recognition motif 2 4
IPR034138 Nucleolar protein 8, RNA recognition motif 1
IPR034146 snRNP35, RNA recognition motif 4
IPR034148 NCBP2, RNA recognition motif 4
IPR034150 SF3B6, RNA recognition motif 2
IPR034158 SF3B4, RNA recognition motif 1 4
IPR034159 SF3B4, RNA recognition motif 2 2
IPR034201 RNPS1, RNA recognition motif 2
IPR034215 RBM42, RNA recognition motif 4
IPR034219 ZCRB1, RNA recognition motif 2
IPR034220 RBM34, RNA recognition motif 1 2
IPR034240 eIF3G, RNA recognition motif 12
IPR034254 DNAJC17, RNA recognition motif 2
IPR034257 Acinus, RNA recognition motif 18
IPR034261 CNOT4, RNA recognition motif 8
IPR034264 RBM48, RNA recognition motif 2
IPR034268 RBM25, RNA recognition motif 7
IPR034349 NUCL, RNA recognition motif 1 2
IPR034350 NUCL, RNA recognition motif 2 2
IPR034353 ABT1/ESF2, RNA recognition motif 8
IPR034360 Vip1-like, RNA recognition motif, plant 2
IPR034361 PHIP1, RNA recognition motif 1 4
IPR034363 eIF3B, RNA recognition motif 6
IPR034365 AtC3H46-like, RNA recognition motif 20
IPR034423 Probable RNA-binding protein 19, RNA recognition motif 5 2
IPR034453 MEI2-like, RNA recognition motif 1 2
IPR034793 PTBPH1/PTBPH2, RNA recognition motif 2 2
IPR034794 PTBPH1/PTBPH2, RNA recognition motif 3 2
IPR034823 CID8-like protein, RNA recognition motif 1 20
IPR034825 CID8-like protein, RNA recognition motif 2 8
IPR035009 SR140, RNA recognition motif 2
IPR039157 RNA-binding protein 18, RNA recognition motif 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001