Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.2e-38 161.8 78 100.0
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.6e-25 119.0 73 72.6
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 2.1e-25 118.6 77 67.5
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 6.8e-24 113.6 76 65.8
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 2.0e-23 112.1 76 65.8
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 9.8e-23 109.8 75 64.0
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 1.3e-22 109.4 77 62.3
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 3.7e-22 107.8 77 61.0
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 4.9e-22 107.5 77 62.3
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.4e-21 105.9 77 61.0
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 2.4e-21 105.1 77 62.3
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 2.4e-21 105.1 77 61.0
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.4e-21 105.1 77 64.9
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.4e-21 105.1 77 64.9
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 2.4e-21 105.1 77 59.7
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 4.1e-21 104.4 77 59.7
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 4.1e-21 104.4 74 59.5
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 5.4e-21 104.0 75 61.3
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 5.4e-21 104.0 75 62.7
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 7.0e-21 103.6 77 62.3
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 7.0e-21 103.6 78 61.5
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 7.0e-21 103.6 76 63.2
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 9.1e-21 103.2 77 59.7
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 9.1e-21 103.2 77 59.7
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 9.1e-21 103.2 77 62.3
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 9.1e-21 103.2 77 59.7
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 9.1e-21 103.2 77 59.7
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 1.2e-20 102.8 73 54.8
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 1.6e-20 102.4 77 58.4
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 2.7e-20 101.7 77 58.4
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 3.5e-20 101.3 77 59.7
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.5e-20 101.3 77 58.4
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.5e-20 101.3 77 58.4
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 3.5e-20 101.3 75 60.0
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 4.5e-20 100.9 77 57.1
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 4.5e-20 100.9 75 61.3
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 4.5e-20 100.9 77 59.7
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 4.5e-20 100.9 77 61.0
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 5.9e-20 100.5 75 58.7
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 5.9e-20 100.5 75 60.0
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 7.7e-20 100.1 73 56.2
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 7.7e-20 100.1 77 57.1
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 7.7e-20 100.1 77 57.1
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.0e-19 99.8 75 56.0
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 1.0e-19 99.8 77 58.4
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 1.0e-19 99.8 75 60.0
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 1.0e-19 99.8 75 60.0
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.3e-19 99.4 77 59.7
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 1.3e-19 99.4 77 58.4
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 1.7e-19 99.0 77 58.4
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 1.7e-19 99.0 75 58.7
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 1.7e-19 99.0 77 58.4
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 1.7e-19 99.0 77 58.4
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 1.7e-19 99.0 77 58.4
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 1.7e-19 99.0 77 55.8
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 1.7e-19 99.0 75 57.3
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 1.7e-19 99.0 75 58.7
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 1.7e-19 99.0 75 58.7
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 2.3e-19 98.6 77 57.1
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 2.3e-19 98.6 75 58.7
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 3.8e-19 97.8 75 56.0
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 5.0e-19 97.4 75 56.0
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 5.0e-19 97.4 75 56.0
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 5.0e-19 97.4 75 61.3
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 6.6e-19 97.1 75 56.0
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 6.6e-19 97.1 75 56.0
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 8.6e-19 96.7 75 60.0
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 8.6e-19 96.7 75 57.3
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 8.6e-19 96.7 77 57.1
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 1.1e-18 96.3 75 57.3
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.1e-18 96.3 75 56.0
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 1.1e-18 96.3 75 61.3
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 1.5e-18 95.9 77 58.4
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 1.5e-18 95.9 75 57.3
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.9e-18 95.5 75 57.3
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 1.9e-18 95.5 75 57.3
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.9e-18 95.5 75 56.0
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 2.5e-18 95.1 77 55.8
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 4.2e-18 94.4 75 58.7
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 4.2e-18 94.4 75 57.3
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 5.5e-18 94.0 75 56.0
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 5.5e-18 94.0 75 57.3
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 7.2e-18 93.6 75 57.3
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 9.5e-18 93.2 77 53.2
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.2e-17 92.8 75 57.3
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.1e-17 92.0 75 53.3
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 2.8e-17 91.7 75 57.3
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 2.8e-17 91.7 77 57.1
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 2.8e-17 91.7 77 54.5
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 4.7e-17 90.9 66 60.6
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 6.1e-17 90.5 66 62.1
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 6.1e-17 90.5 75 54.7
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 6.1e-17 90.5 77 51.9
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 1.8e-16 89.0 75 54.7
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 1.8e-16 89.0 77 54.5
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 3.0e-16 88.2 75 53.3
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 3.0e-16 88.2 75 53.3
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 3.0e-16 88.2 75 53.3
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 5.2e-16 87.4 77 53.2
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 5.2e-16 87.4 75 52.0
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 1.2e-15 86.3 58 67.2
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 1.5e-15 85.9 82 48.8
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 2.6e-15 85.1 75 50.7
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 3.4e-15 84.7 90 45.6
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 1.1e-13 79.7 72 50.0
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 3.2e-13 78.2 58 55.2
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 4.6e-12 74.3 55 56.4
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.0e-11 73.2 53 64.2
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 1.3e-11 72.8 58 58.6
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 2.5e-10 68.6 70 44.3
FAN03G2245 Fragaria x ananassa HOM05D005147 ORTHO05D006132 2.5e-10 68.6 64 53.1
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 6.2e-09 63.9 72 37.5
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 8.9e-08 60.1 56 50.0
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 1.5e-07 59.3 47 63.8
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 3.4e-07 58.2 56 44.6
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 3.4e-07 58.2 71 38.0
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 4.4e-07 57.8 46 58.7
FvH4_2g15540 Fragaria vesca HOM05D002097 ORTHO05D002248 7.5e-07 57.0 71 38.0
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 7.5e-07 57.0 71 38.0
RcHm_v2.0_Chr6g0278711 Rosa chinensis HOM05D002097 ORTHO05D002248 7.5e-07 57.0 71 38.0
Sed0017736 Sechium edule HOM05D002097 ORTHO05D002248 9.8e-07 56.6 71 40.8
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.3e-06 56.2 77 40.3
vmacro07057 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.7e-06 55.8 45 60.0
EL10Ac6g15238 Beta vulgaris HOM05D002097 ORTHO05D002248 2.9e-06 55.1 71 38.0
Dinv14120 Davidia involucrata HOM05D002097 ORTHO05D002248 2.9e-06 55.1 71 39.4
Cc07_g16800 Coffea canephora HOM05D002097 ORTHO05D002248 4.9e-06 54.3 71 40.8
MCO14G511 Micromonas commoda HOM05D002097 ORTHO05D002248 4.9e-06 54.3 71 40.8
Rhsim11G0193000 Rhododendron simsii HOM05D002097 ORTHO05D002248 4.9e-06 54.3 71 39.4
HPP92_004408 Vanilla planifolia HOM05D002097 ORTHO05D002248 4.9e-06 54.3 71 36.6
Sp3g30210 Schrenkiella parvula HOM05D002097 ORTHO05D002248 6.4e-06 53.9 71 39.4
FAN15G0394 Fragaria x ananassa HOM05D002097 ORTHO05D002248 8.3e-06 53.5 70 37.1
FAN27G2262 Fragaria x ananassa HOM05D000686 ORTHO05D002248 8.3e-06 53.5 70 37.1
vmacro02285 Vaccinium macrocarpon HOM05D002097 ORTHO05D002248 8.3e-06 53.5 71 38.0


User provided reference genes

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