Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Nitab4.5_0002093g0040 Nicotiana tabacum HOM05D000563 ORTHO05D006573 4.6e-58 227.6 111 100.0
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 6.0e-42 174.1 103 82.5
Nitab4.5_0007767g0050 Nicotiana tabacum HOM05D000563 ORTHO05D006573 1.3e-41 172.9 86 97.7
arahy.Tifrunner.gnm1.ann1.A338HQ Arachis hypogaea HOM05D000563 ORTHO05D006573 1.7e-41 172.6 93 90.3
ECA248G1345 Erigeron canadensis HOM05D000563 ORTHO05D006573 1.7e-41 172.6 86 96.5
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 2.3e-41 172.2 86 96.5
CiPaw.07G094800 Carya illinoinensis HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
Dinv11258 Davidia involucrata HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
HanXRQChr01g0002411 Helianthus annuus HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
Medtr7g104700 Medicago truncatula HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
Phvul.001G148500 Phaseolus vulgaris HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
Psat0s3362g0080 Pisum sativum HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
GSVIVG01011077001 Vitis vinifera HOM05D000563 ORTHO05D006573 2.3e-41 172.2 86 96.5
arahy.Tifrunner.gnm1.ann1.VC9ZTT Arachis hypogaea HOM05D000563 ORTHO05D006573 3.0e-41 171.8 86 95.3
CiPaw.08G103000 Carya illinoinensis HOM05D000563 ORTHO05D006573 3.0e-41 171.8 86 95.3
Ca_08564_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 3.0e-41 171.8 86 95.3
Migut.D00260 Erythranthe guttata HOM05D000563 ORTHO05D006573 3.0e-41 171.8 86 95.3
FAN16G1803 Fragaria x ananassa HOM05D000563 ORTHO05D006573 3.0e-41 171.8 113 77.9
QL12p022805 Quercus lobata HOM05D000563 ORTHO05D006573 3.0e-41 171.8 85 96.5
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 3.0e-41 171.8 86 95.3
ClCG09G008910 Citrullus lanatus HOM05D000563 ORTHO05D006573 3.9e-41 171.4 96 86.5
Lalb_Chr02g0142891 Lupinus albus HOM05D000563 ORTHO05D006573 3.9e-41 171.4 86 95.3
Lalb_Chr21g0306571 Lupinus albus HOM05D000563 ORTHO05D006573 3.9e-41 171.4 86 95.3
Actinidia24875 Actinidia chinensis HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
CSS0039726 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Duzib133G0114 Durio zibethinus HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Eucgr.K03403 Eucalyptus grandis HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Gohir.D08G079000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Gorai.004G083500 Gossypium raimondii HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Manes.01G210300 Manihot esculenta HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Manes.05G073100 Manihot esculenta HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Medtr7g094500 Medicago truncatula HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
PGR044G0879 Punica granatum HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
Thecc.01G284300 Theobroma cacao HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
TWI23G1003 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 5.1e-41 171.0 86 95.3
MELO3C023545.2 Cucumis melo HOM05D000563 ORTHO05D006573 6.6e-41 170.6 86 94.2
FAN11G3431 Fragaria x ananassa HOM05D000563 ORTHO05D006573 6.6e-41 170.6 99 84.8
PSO210G0485 Papaver somniferum HOM05D000563 ORTHO05D006573 6.6e-41 170.6 86 94.2
PSO832G0267 Papaver somniferum HOM05D000563 ORTHO05D006573 6.6e-41 170.6 86 94.2
Duzib211G0084 Durio zibethinus HOM05D000563 ORTHO05D006573 8.7e-41 170.2 97 87.6
FvH4_3g16480 Fragaria vesca HOM05D000563 ORTHO05D006573 8.7e-41 170.2 86 94.2
FAN21G1624 Fragaria x ananassa HOM05D000563 ORTHO05D006573 8.7e-41 170.2 86 94.2
RcHm_v2.0_Chr5g0027471 Rosa chinensis HOM05D000563 ORTHO05D006573 8.7e-41 170.2 86 94.2
Gohir.A08G069900 Gossypium hirsutum HOM05D000563 ORTHO05D006573 1.1e-40 169.9 86 94.2
Nn4g26163 Nelumbo nucifera HOM05D000563 ORTHO05D006573 1.1e-40 169.9 86 94.2
Atru.chr5.1355 Acer truncatum HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
Ciclev10023059m.g Citrus clementina HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
MELO3C028853.2 Cucumis melo HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 94.2
FAN25G0039 Fragaria x ananassa HOM05D000563 ORTHO05D006573 1.5e-40 169.5 96 84.4
MD05G1209800 Malus domestica HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
MD10G1196100 Malus domestica HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
Potri.003G014900 Populus trichocarpa HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
Potri.004G219000 Populus trichocarpa HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
THA.LOC104801217 Tarenaya hassleriana HOM05D000563 ORTHO05D006573 1.5e-40 169.5 86 93.0
Aqoxy2G03235 Aquilegia oxysepala HOM05D000563 ORTHO05D006573 1.9e-40 169.1 86 94.2
CANSAT56G4364 Cannabis sativa HOM05D000563 ORTHO05D006573 1.9e-40 169.1 86 93.0
CsaV3_7G031130 Cucumis sativus L. HOM05D000563 ORTHO05D006573 1.9e-40 169.1 86 93.0
Cc01_g19800 Coffea canephora HOM05D000563 ORTHO05D006573 2.5e-40 168.7 86 94.2
Duzib138G0853 Durio zibethinus HOM05D000563 ORTHO05D006573 2.5e-40 168.7 86 95.3
Prupe.4G147700 Prunus persica HOM05D000563 ORTHO05D006573 2.5e-40 168.7 86 93.0
TWI59G0344 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 2.5e-40 168.7 86 94.2
TAR365G0146 Trochodendron aralioides HOM05D000563 ORTHO05D006573 2.5e-40 168.7 86 94.2
vmacro14940 Vaccinium macrocarpon HOM05D000563 ORTHO05D006573 2.5e-40 168.7 86 94.2
CARHR002640 Cardamine hirsuta HOM05D000563 ORTHO05D006573 4.3e-40 167.9 86 91.9
Hma1.2p1_0628F.1_g191850 Hydrangea macrophylla HOM05D000563 ORTHO05D006573 4.3e-40 167.9 84 95.2
Lsat_1_v5_gn_5_187481 Lactuca sativa HOM05D000563 ORTHO05D006573 4.3e-40 167.9 84 95.2
CAN.G1679.5 Capsicum annuum HOM05D000563 ORTHO05D006573 5.6e-40 167.5 86 93.0
Nitab4.5_0006874g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 5.6e-40 167.5 86 93.0
Sabra03G0008000 Salix brachista HOM05D000563 ORTHO05D006573 5.6e-40 167.5 86 90.7
Solyc09g072970.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 5.6e-40 167.5 86 93.0
PGSC0003DMG400003836 Solanum tuberosum HOM05D000563 ORTHO05D006573 5.6e-40 167.5 86 93.0
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 7.3e-40 167.2 86 91.9
Peaxi162Scf00980g00016 Petunia axillaris HOM05D000563 ORTHO05D006573 7.3e-40 167.2 86 91.9
unitig_26.g10157 Utricularia gibba HOM05D000563 ORTHO05D006573 7.3e-40 167.2 86 93.0
BcaB03g16569 Brassica carinata HOM05D000563 ORTHO05D006573 9.6e-40 166.8 92 84.8
Gorai.007G134200 Gossypium raimondii HOM05D000563 ORTHO05D006573 9.6e-40 166.8 86 94.2
HanXRQChr15g0466481 Helianthus annuus HOM05D000563 ORTHO05D006573 9.6e-40 166.8 86 91.9
Nn1g02139 Nelumbo nucifera HOM05D000563 ORTHO05D006573 9.6e-40 166.8 86 93.0
Solyc06g084350.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 9.6e-40 166.8 86 91.9
Sopen06g035740 Solanum pennellii HOM05D000563 ORTHO05D006573 9.6e-40 166.8 86 91.9
CARHR002690 Cardamine hirsuta HOM05D000563 ORTHO05D006573 1.3e-39 166.4 86 90.7
Sopen09g028780 Solanum pennellii HOM05D000563 ORTHO05D006573 1.3e-39 166.4 86 91.9
BcaC05g24542 Brassica carinata HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
BcaC05g24543 Brassica carinata HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
A10p01870 Brassica napus HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
BolC5t28963H Brassica oleracea HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
BraA10t42461Z Brassica rapa HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
Carub.0001s0244 Capsella rubella HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
Thhalv10009199m.g Eutrema salsugineum HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
Sp1g02320 Schrenkiella parvula HOM05D000563 ORTHO05D006573 1.6e-39 166.0 86 90.7
BcaC07g36971 Brassica carinata HOM05D000563 ORTHO05D006573 3.6e-39 164.9 86 90.7
A08p37390 Brassica napus HOM05D000563 ORTHO05D006573 3.6e-39 164.9 86 90.7
C08p00530 Brassica napus HOM05D000563 ORTHO05D006573 3.6e-39 164.9 86 90.7
BolC8t46853H Brassica oleracea HOM05D000563 ORTHO05D006573 3.6e-39 164.9 86 90.7
BraA08t35636Z Brassica rapa HOM05D000563 ORTHO05D006573 3.6e-39 164.9 86 90.7
Glyma.03G150900 Glycine max HOM05D000563 ORTHO05D006573 4.8e-39 164.5 86 91.9
Glyma.19G153500 Glycine max HOM05D000563 ORTHO05D006573 4.8e-39 164.5 86 91.9
Gohir.D11G125000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 6.2e-39 164.1 83 95.2
HPP92_004165 Vanilla planifolia HOM05D000563 ORTHO05D006573 6.2e-39 164.1 86 89.5
AUR62011805 Chenopodium quinoa HOM05D000563 ORTHO05D006573 1.1e-38 163.3 86 89.5
AUR62024651 Chenopodium quinoa HOM05D000563 ORTHO05D006573 1.1e-38 163.3 86 89.5
AL1G12840 Arabidopsis lyrata HOM05D000563 ORTHO05D006573 1.4e-38 162.9 86 89.5
AT1G03330 Arabidopsis thaliana HOM05D000563 ORTHO05D006573 1.4e-38 162.9 86 89.5
Hund22131 Selenicereus undatus HOM05D000563 ORTHO05D006573 1.4e-38 162.9 86 89.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.8e-38 162.5 86 88.4
Ah.02g112280 Amaranthus hybridus HOM05D000563 ORTHO05D006573 2.4e-38 162.2 86 88.4
PGSC0003DMG400020045 Solanum tuberosum HOM05D000563 ORTHO05D006573 4.0e-38 161.4 85 90.6
Os08g0154700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D006573 6.9e-38 160.6 86 88.4
Zm00001eb172640 Zea mays HOM05D000563 ORTHO05D006573 6.9e-38 160.6 86 88.4
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 9.0e-38 160.2 86 86.0
Zm00001eb416130 Zea mays HOM05D000563 ORTHO05D006573 9.0e-38 160.2 86 87.2
MBI19_g06754_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.5e-37 159.5 86 86.0
MBI19_g44975_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.5e-37 159.5 86 86.0
Nitab4.5_0001323g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 1.5e-37 159.5 83 91.6
AagrBONN_evm.TU.Sc2ySwM_344.5103 Anthoceros agrestis HOM05D000563 ORTHO05D006573 3.4e-37 158.3 86 84.9
MBI17_g11989_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 3.4e-37 158.3 86 84.9
CDE11G0229 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 5.8e-37 157.5 86 83.7
CDE11G0885 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 5.8e-37 157.5 86 83.7
Mapoly0002s0343 Marchantia polymorpha HOM05D000563 ORTHO05D006573 1.7e-36 156.0 84 84.5
ATR0626G009 Amborella trichopoda HOM05D000563 ORTHO05D006573 2.2e-36 155.6 86 84.9
CDE05G0374 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 2.2e-36 155.6 86 82.6
Pp3c2_19710 Physcomitrium patens HOM05D000563 ORTHO05D006573 1.1e-35 153.3 86 82.6
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 1.9e-35 152.5 96 78.1
SMO146G0171 Selaginella moellendorffii HOM05D000563 ORTHO05D006573 1.6e-34 149.4 86 81.4
Cre10.g441950 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D006573 1.1e-32 143.3 85 78.8
Sabra01G0166100 Salix brachista HOM05D000563 ORTHO05D006573 2.5e-32 142.1 146 54.8
EL10Ac2g04686 Beta vulgaris HOM05D000563 ORTHO05D006573 8.1e-31 137.1 144 54.2
PRCOL_00001823 Prasinoderma coloniale HOM05D000563 ORTHO05D006573 1.8e-30 136.0 83 75.9
TPR.G37604 Trifolium pratense HOM05D000563 ORTHO05D006573 7.6e-29 130.6 126 58.7
Ah.11g049240 Amaranthus hybridus HOM05D000563 ORTHO05D006573 5.5e-27 124.4 176 43.8
Cpa.g.sc50.145 Carica papaya HOM05D000563 ORTHO05D000536 1.9e-24 115.9 58 94.8
SalBow6G0934 Salvia bowleyana HOM05D000563 ORTHO05D006573 7.9e-18 94.0 72 68.1
TPR.G29312 Trifolium pratense HOM05D000563 ORTHO05D006573 1.3e-17 93.2 62 71.0
Ca_08598_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 2.3e-17 92.4 48 89.6
DCAR_018402 Daucus carota HOM05D000563 ORTHO05D006573 3.9e-17 91.7 46 93.5
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 3.9e-17 91.7 46 93.5
TAR362G0386 Trochodendron aralioides HOM05D000563 ORTHO05D006573 3.9e-17 91.7 47 91.5
TPR.G20367 Trifolium pratense HOM05D000563 ORTHO05D006573 8.7e-17 90.5 46 91.3
Sed0000117 Sechium edule HOM05D000563 ORTHO05D006573 1.1e-16 90.1 47 89.4
SalBow4G1726 Salvia bowleyana HOM05D000563 ORTHO05D006573 1.9e-16 89.4 75 61.3
CSS0020898 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 3.7e-15 85.1 44 90.9
Oeu011172.1 Olea europaea HOM05D000563 ORTHO05D006573 3.7e-15 85.1 40 95.0
MELO3C029155.2 Cucumis melo HOM05D000563 ORTHO05D006573 3.1e-14 82.0 40 92.5
Actinidia24317 Actinidia chinensis HOM05D000563 ORTHO05D006573 4.1e-14 81.6 40 95.0
MBI17_g11991_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.5e-13 79.7 45 77.8
AUR62041552 Chenopodium quinoa HOM05D000563 ORTHO05D006573 1.0e-12 77.0 46 78.3
MBI17_g11992_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.4e-11 73.2 43 72.1
BcaB01g01720 Brassica carinata HOM05D005272 ORTHO05D006573 2.1e-10 69.3 56 64.3
Gohir.A11G120250 Gossypium hirsutum HOM05D000563 ORTHO05D006573 6.9e-06 54.3 26 100.0


User provided reference genes

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