Gene: PGSC0003DMG400003836
General Information
Structural Information
- Species Solanum tuberosum
- Gene Identifier PGSC0003DMG400003836
- Transcript Identifier PGSC0003DMT400009801
- Gene Type Coding gene
- Location ST4.03ch09 : 51027695-51032208 : negative
Gene Family Information
- ID HOM05D000563
- #Genes/#Species 981/100
- Phylogenetic origin
- ID ORTHO05D006573
- #Genes/#Species 141/85
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- pacid 37455993
- id PGSC0003DMG400003836.v4.03
- uniprot M0ZWY5
Descriptions
- Description Speckle-type POZ protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016567 | ISO | PLAZA Homology (enrichment) | protein ubiquitination | HOM05D000563 |
| GO:0000398 | IBA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006397 | IEA | InterPro | mRNA processing | |
| GO:0008380 | IEA | GOA Database | RNA splicing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G03330 |
| GO:0003723 | IBA IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0071011 | IBA | GOA Database | precatalytic spliceosome | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G03330 |
| GO:1990726 | IBA | GOA Database | Lsm1-7-Pat1 complex | |
| GO:0000932 | IBA | GOA Database | P-body | |
| GO:0005688 | IBA IEA | GOA Database | U6 snRNP | |
| GO:0046540 | IBA IEA | GOA Database | U4/U6 x U5 tri-snRNP complex | |
| GO:0071013 | IBA | GOA Database | catalytic step 2 spliceosome | |
| GO:0005681 | IEA | GOA Database | spliceosomal complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.3.2 | RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm2 |