Gene: SGA_v2.0_scaffold1G00443
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold1G00443
- Transcript Identifier SGA_v2.0_scaffold1T00443
- Gene Type Coding gene
- Location scaffold1 : 3326552-3345520 : positive
Gene Family Information
- ID HOM05D000563
- #Genes/#Species 981/100
- Phylogenetic origin
- ID ORTHO05D003998
- #Genes/#Species 195/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- product Elongation factor Tu
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016567 | ISO | PLAZA Homology (enrichment) | protein ubiquitination | HOM05D000563 |
| GO:0042631 | ISO | PLAZA Integrative Orthology | cellular response to water deprivation | AT5G19000 |
| GO:0046686 | ISO | PLAZA Integrative Orthology | response to cadmium ion | AT4G02930 |
| GO:0006970 | ISO | PLAZA Integrative Orthology | response to osmotic stress | AT5G19000 |
| GO:0071472 | ISO | PLAZA Integrative Orthology | cellular response to salt stress | AT5G19000 |
| GO:0006397 | IEA | InterPro | mRNA processing | |
| GO:0006414 | IEA | InterPro | translational elongation |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0042802 | ISO | PLAZA Integrative Orthology | identical protein binding | AT5G19000 |
| GO:0050897 | ISO | PLAZA Integrative Orthology | cobalt ion binding | AT4G02930 |
| GO:0008270 | ISO | PLAZA Integrative Orthology | zinc ion binding | AT4G02930 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0005524 | ISO | PLAZA Integrative Orthology | ATP binding | AT4G02930 |
| GO:0003924 | IEA | InterPro | GTPase activity | |
| GO:0005525 | IEA | InterPro | GTP binding | |
| GO:0003746 | IEA | InterPro | translation elongation factor activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT4G02930 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT4G02930 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT5G19000 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR010920 | LSM domain superfamily |
| IPR002083 | MATH/TRAF domain |
| IPR004541 | Translation elongation factor EFTu/EF1A, bacterial/organelle |
| IPR033720 | Elongation factor Tu, domain 2 |
| IPR011333 | SKP1/BTB/POZ domain superfamily |
| IPR008974 | TRAF-like |
| IPR041709 | Elongation factor Tu (EF-Tu), GTP-binding domain |
| IPR001163 | LSM domain, eukaryotic/archaea-type |
| IPR009000 | Translation protein, beta-barrel domain superfamily |
| IPR004161 | Translation elongation factor EFTu-like, domain 2 |
| IPR016654 | U6 snRNA-associated Sm-like protein LSm2 |
| IPR000210 | BTB/POZ domain |
| IPR000795 | Translational (tr)-type GTP-binding domain |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal |
| IPR005225 | Small GTP-binding protein domain |
| IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal |
| Mapman id | Description |
|---|---|
| 16.2.3.2 | RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm2 |
| 17.7.4.1 | Protein biosynthesis.organelle machinery.translation elongation.elongation factor (EF-Tu) |
| 19.2.2.8.2.2.6 | Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ubiquitin ligase complexes.BTB/POZ substrate adaptor activities.substrate adaptor (BPM) |