Gene: Zm00001eb172640
General Information
Structural Information
- Species Zea mays
- Gene Identifier Zm00001eb172640
- Transcript Identifier Zm00001eb172640_T001
- Gene Type Coding gene
- Location 4 : 35394476-35397450 : negative
Gene Family Information
- ID HOM05D000563
- #Genes/#Species 981/100
- Phylogenetic origin
- ID ORTHO05D006573
- #Genes/#Species 141/85
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Zm00001eb172640_T001
- pid Zm00001eb172640_P001
- uniprot A0A3L6F5V8
- uniprot B6UER1
- uniprot A0A1D6J0C6
- uniprot A0A3L6G520
- uniprot A0A1D6PW37
- uniprot B6TMC2
- entrez 100276999
- refseq XM_008680044.1
- refseq XP_008678266.1
- V4_identifier Zm00001d049557
Descriptions
- Description Zm00001e109261
- Description SnRNP core Sm protein Sm-X5-like protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016567 | ISO | PLAZA Homology (enrichment) | protein ubiquitination | HOM05D000563 |
| GO:0006397 | IEA | GOA Database | mRNA processing | |
| GO:0006397 | IEA | InterPro | mRNA processing | |
| GO:0000398 | IBA | GOA Database | mRNA splicing, via spliceosome | |
| GO:0008380 | IEA | GOA Database | RNA splicing |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT1G03330 |
| GO:0003723 | IBA IEA | GOA Database | RNA binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000932 | IBA | GOA Database | P-body | |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G03330 |
| GO:0071013 | IBA | GOA Database | catalytic step 2 spliceosome | |
| GO:0071011 | IBA | GOA Database | precatalytic spliceosome | |
| GO:0046540 | IBA IEA | GOA Database | U4/U6 x U5 tri-snRNP complex | |
| GO:0005688 | IBA IEA | GOA Database | U6 snRNP | |
| GO:1990726 | IBA | GOA Database | Lsm1-7-Pat1 complex | |
| GO:0005681 | IEA | GOA Database | spliceosomal complex | |
| GO:0005634 | IEA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.2.3.2 | RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm2 |