Gene: Cfa006100

General Information

Structural Information

Species Carpinus fangiana
Gene Identifier Cfa006100
Transcript Identifier Cfa006100.t1
Gene Type Coding gene
Location Cfa02 : 29785479-29795003 : positive

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D000563
#Genes/#Species 981/100
Phylogenetic origin

ID ORTHO05D000536
#Genes/#Species 803/100
Phylogenetic origin

Gene Duplication Information

Block Duplication Block duplicate

Labels

Identifiers

tid Cfa006100.t1

Descriptions

Ortholog descriptions

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0006397	IEA	InterPro	mRNA processing
GO:0016567	IEA	InterPro	protein ubiquitination
GO:0071472	ISO	PLAZA Integrative Orthology	cellular response to salt stress	AT5G19000
GO:0006970	ISO	PLAZA Integrative Orthology	response to osmotic stress	AT5G19000
GO:0042631	ISO	PLAZA Integrative Orthology	cellular response to water deprivation	AT5G19000

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005515	IEA	InterPro	protein binding
GO:0042802	ISO	PLAZA Integrative Orthology	identical protein binding	AT5G19000

Cellular Component

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0005634	ISO	PLAZA Integrative Orthology	nucleus	AT5G19000

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR016654	U6 snRNA-associated Sm-like protein LSm2
IPR011333	SKP1/BTB/POZ domain superfamily
IPR010920	LSM domain superfamily
IPR008974	TRAF-like
IPR001163	LSM domain, eukaryotic/archaea-type
IPR002083	MATH/TRAF domain
IPR045005	BTB/POZ and MATH domain-containing protein 1-6
IPR000210	BTB/POZ domain

Mapman id	Description
16.2.3.2	RNA processing.pre-mRNA splicing.U6-associated LSm accessory ribonucleoprotein complex.component LSm2
19.2.2.8.2.2.6	Protein homeostasis.ubiquitin-proteasome system.ubiquitin-fold protein conjugation.Cullin-based ubiquitylation complexes.CUL3-BTB E3 ubiquitin ligase complexes.BTB/POZ substrate adaptor activities.substrate adaptor (BPM)