Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Haze_04617 Corylus avellana HOM05D005147 ORTHO05D006132 5.3e-147 524.2 249 100.0
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 7.2e-35 151.8 72 97.2
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 3.9e-33 146.0 72 91.7
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 9.7e-32 141.4 72 87.5
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 1.3e-31 141.0 72 87.5
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 1.3e-31 141.0 72 87.5
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 2.2e-31 140.2 72 88.9
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 2.8e-31 139.8 72 88.9
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 3.7e-31 139.4 72 86.1
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 4.8e-31 139.0 72 86.1
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 6.3e-31 138.7 72 84.7
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 8.2e-31 138.3 72 84.7
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 1.8e-30 137.1 72 86.1
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 1.8e-30 137.1 72 84.7
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 3.1e-30 136.3 72 83.3
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 3.1e-30 136.3 71 85.9
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 4.1e-30 136.0 72 83.3
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 4.1e-30 136.0 72 83.3
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 5.3e-30 135.6 72 84.7
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 6.9e-30 135.2 72 84.7
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 6.9e-30 135.2 72 84.7
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 6.9e-30 135.2 72 84.7
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 9.1e-30 134.8 72 83.3
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 9.1e-30 134.8 72 83.3
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 1.2e-29 134.4 72 83.3
Atru.chr10.460 Acer truncatum HOM05D005147 ORTHO05D006132 1.5e-29 134.0 72 84.7
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.5e-29 134.0 72 83.3
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 1.5e-29 134.0 72 83.3
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 1.5e-29 134.0 72 84.7
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 2.6e-29 133.3 72 81.9
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 2.6e-29 133.3 72 81.9
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 2.6e-29 133.3 72 80.6
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 3.4e-29 132.9 72 81.9
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 3.4e-29 132.9 72 81.9
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 3.4e-29 132.9 72 84.7
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 3.4e-29 132.9 70 82.9
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 4.5e-29 132.5 72 81.9
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 5.9e-29 132.1 72 80.6
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 5.9e-29 132.1 72 81.9
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.9e-29 132.1 69 87.0
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 5.9e-29 132.1 69 87.0
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 7.7e-29 131.7 72 80.6
vmacro07058 Vaccinium macrocarpon HOM05D005147 ORTHO05D006132 1.0e-28 131.3 72 81.9
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.3e-28 131.0 71 81.7
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.7e-28 130.6 72 83.3
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 1.7e-28 130.6 72 80.6
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 2.2e-28 130.2 72 81.9
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 2.9e-28 129.8 72 79.2
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 2.9e-28 129.8 71 78.9
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 2.9e-28 129.8 71 78.9
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 2.9e-28 129.8 70 81.4
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 3.8e-28 129.4 75 76.0
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 5.0e-28 129.0 69 81.2
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 6.5e-28 128.6 72 80.6
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 6.5e-28 128.6 72 81.9
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 8.5e-28 128.3 71 80.3
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 8.5e-28 128.3 72 80.6
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.1e-27 127.9 69 79.7
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.1e-27 127.9 69 79.7
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 1.9e-27 127.1 72 79.2
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 2.5e-27 126.7 71 78.9
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 3.2e-27 126.3 72 79.2
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 3.2e-27 126.3 71 78.9
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 3.2e-27 126.3 71 78.9
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 5.5e-27 125.6 72 79.2
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 7.2e-27 125.2 71 77.5
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 1.2e-26 124.4 72 81.9
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.1e-26 123.6 72 76.4
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 7.9e-26 121.7 72 77.8
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 1.8e-25 120.6 71 74.6
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 1.8e-25 120.6 71 80.3
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 3.9e-25 119.4 72 73.6
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 5.1e-25 119.0 71 73.2
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 5.1e-25 119.0 72 76.4
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 6.7e-25 118.6 70 74.3
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 6.7e-25 118.6 69 76.8
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 8.8e-25 118.2 72 72.2
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 1.1e-24 117.9 72 73.6
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 1.5e-24 117.5 69 73.9
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 5.7e-24 115.5 69 72.5
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 7.4e-24 115.2 72 72.2
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 7.4e-24 115.2 72 70.8
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 9.7e-24 114.8 72 69.4
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 9.7e-24 114.8 72 70.8
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 9.7e-24 114.8 72 70.8
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 9.7e-24 114.8 72 69.4
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 1.3e-23 114.4 72 68.1
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 1.3e-23 114.4 72 68.1
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 2.2e-23 113.6 69 71.0
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 2.2e-23 113.6 72 70.8
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 6.3e-23 112.1 72 63.9
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 1.8e-22 110.5 69 69.6
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 7.0e-22 108.6 72 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 2.2e-20 103.6 74 63.5
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 2.2e-20 103.6 74 63.5
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.9e-19 100.5 69 66.7
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 9.4e-19 98.2 44 95.5
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 9.4e-19 98.2 71 62.0
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 2.1e-18 97.1 70 60.0
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 3.6e-18 96.3 74 56.8
BcaC06g35123 Brassica carinata HOM05D005147 ORTHO05D006132 4.7e-18 95.9 72 62.5
C05p37710 Brassica napus HOM05D005147 ORTHO05D006132 4.7e-18 95.9 72 62.5
C02p46260 Brassica napus HOM05D005147 ORTHO05D006132 1.0e-17 94.7 72 61.1
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 5.2e-17 92.4 65 66.2
A09p57480 Brassica napus HOM05D005147 ORTHO05D006132 8.8e-17 91.7 72 59.7
BraA09t41139Z Brassica rapa HOM05D005147 ORTHO05D006132 8.8e-17 91.7 72 59.7
BolC9t55790H Brassica oleracea HOM05D005147 ORTHO05D006132 1.1e-16 91.3 72 59.7
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.1e-16 91.3 52 76.9
A03p60580 Brassica napus HOM05D005147 ORTHO05D006132 2.6e-16 90.1 72 59.7
BcaC05g27774 Brassica carinata HOM05D005147 ORTHO05D006132 2.2e-15 87.0 72 56.9
BcaC04g21654 Brassica carinata HOM05D000305 ORTHO05D000065 5.9e-13 79.0 58 62.1
C02p08230 Brassica napus HOM05D005147 ORTHO05D006132 8.5e-12 75.1 76 50.0
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 1.9e-11 73.9 51 60.8
FAN16G1629 Fragaria x ananassa HOM05D000071 ORTHO05D006132 7.2e-11 72.0 33 87.9
FAN17G2636 Fragaria x ananassa HOM05D005147 ORTHO05D006132 9.4e-11 71.6 33 84.8
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 3.6e-10 69.7 31 90.3
CDE09G1068 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 6.1e-10 68.9 34 79.4
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 3.0e-09 66.6 68 50.0
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 4.0e-09 66.2 31 87.1
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 8.8e-09 65.1 72 44.4
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.3e-07 61.2 31 74.2


User provided reference genes

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