Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cfa026444 Carpinus fangiana HOM05D005147 ORTHO05D006132 1.4e-276 955.7 492 100.0
Ca_09963_v3 Cicer arietinum L. HOM05D005147 ORTHO05D006132 9.5e-39 165.6 395 31.4
TPR.G10532 Trifolium pratense HOM05D005147 ORTHO05D006132 2.1e-38 164.5 311 36.3
Ah.06g195220 Amaranthus hybridus HOM05D005147 ORTHO05D006132 4.0e-37 160.2 384 32.0
Medtr1g078210 Medicago truncatula HOM05D005147 ORTHO05D006132 6.8e-37 159.5 431 31.3
Lalb_Chr02g0149501 Lupinus albus HOM05D005147 ORTHO05D006132 1.2e-36 158.7 475 30.5
Zm00001eb093390 Zea mays HOM05D005147 ORTHO05D006132 1.2e-36 158.7 425 31.8
Nn3g19309 Nelumbo nucifera HOM05D005147 ORTHO05D006132 1.5e-36 158.3 393 31.8
HanXRQChr16g0511771 Helianthus annuus HOM05D005147 ORTHO05D006132 2.6e-36 157.5 400 30.8
ATR0743G159 Amborella trichopoda HOM05D005147 ORTHO05D006132 7.5e-36 156.0 409 30.8
Lalb_Chr06g0168531 Lupinus albus HOM05D005147 ORTHO05D006132 7.5e-36 156.0 436 30.5
Hund07384 Selenicereus undatus HOM05D005147 ORTHO05D006132 7.5e-36 156.0 418 31.6
Os04g0496400 Oryza sativa ssp. japonica HOM05D005147 ORTHO05D006132 9.8e-36 155.6 436 31.9
CANSAT64G0126 Cannabis sativa HOM05D005147 ORTHO05D006132 1.3e-35 155.2 434 29.5
FAN02G4331 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.3e-35 155.2 404 31.7
FAN09G3357 Fragaria x ananassa HOM05D005147 ORTHO05D006132 1.3e-35 155.2 406 31.8
MCO16G453 Micromonas commoda HOM05D005147 ORTHO05D006132 1.3e-35 155.2 282 38.3
Eucgr.B01442 Eucalyptus grandis HOM05D005147 ORTHO05D006132 1.7e-35 154.8 356 32.3
Potri.010G179000 Populus trichocarpa HOM05D005147 ORTHO05D006132 1.7e-35 154.8 395 31.6
Sc16g0010670 Simmondsia chinensis HOM05D005147 ORTHO05D006132 1.7e-35 154.8 404 30.4
Glyma.20G218800 Glycine max HOM05D005147 ORTHO05D006132 2.2e-35 154.5 283 36.4
Nitab4.5_0001003g0200 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.9e-35 154.1 396 30.6
RcHm_v2.0_Chr3g0447391 Rosa chinensis HOM05D005147 ORTHO05D006132 2.9e-35 154.1 405 30.9
Prupe.6G365400 Prunus persica HOM05D005147 ORTHO05D006132 6.3e-35 152.9 456 30.5
TAR362G0740 Trochodendron aralioides HOM05D005147 ORTHO05D006132 8.3e-35 152.5 391 30.9
Gorai.003G087900 Gossypium raimondii HOM05D005147 ORTHO05D006132 1.1e-34 152.1 393 30.0
DCAR_023252 Daucus carota HOM05D005147 ORTHO05D006132 1.4e-34 151.8 388 30.9
Gohir.D03G072200 Gossypium hirsutum HOM05D005147 ORTHO05D006132 1.4e-34 151.8 393 30.0
Nitab4.5_0003928g0030 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.4e-34 151.8 358 33.2
PSO675G5070 Papaver somniferum HOM05D005147 ORTHO05D006132 1.4e-34 151.8 443 31.4
Zm00001eb196230 Zea mays HOM05D005147 ORTHO05D006132 1.4e-34 151.8 440 30.5
Cre17.g707050 Chlamydomonas reinhardtii HOM05D005147 ORTHO05D006132 1.8e-34 151.4 312 36.5
Thecc.07G106800 Theobroma cacao HOM05D005147 ORTHO05D006132 1.8e-34 151.4 396 30.1
Cfa006223 Carpinus fangiana HOM05D005147 ORTHO05D006132 2.4e-34 151.0 402 31.8
QL10p016598 Quercus lobata HOM05D005147 ORTHO05D006132 2.4e-34 151.0 455 30.1
AUR62000267 Chenopodium quinoa HOM05D005147 ORTHO05D006132 4.1e-34 150.2 420 31.0
Gohir.A02G107106 Gossypium hirsutum HOM05D005147 ORTHO05D006132 9.2e-34 149.1 393 29.5
Solyc11g008700.2 Solanum lycopersicum HOM05D005147 ORTHO05D006132 1.2e-33 148.7 399 29.6
CBR_g50472 Chara braunii HOM05D005147 ORTHO05D006132 1.6e-33 148.3 440 30.7
MD12G1261400 Malus domestica HOM05D005147 ORTHO05D006132 1.6e-33 148.3 474 29.3
Phvul.007G117900 Phaseolus vulgaris HOM05D005147 ORTHO05D006132 1.6e-33 148.3 437 29.3
MELO3C008955.2 Cucumis melo HOM05D005147 ORTHO05D006132 2.0e-33 147.9 399 30.1
Peaxi162Scf00254g00618 Petunia axillaris HOM05D005147 ORTHO05D006132 2.0e-33 147.9 394 29.7
arahy.Tifrunner.gnm1.ann1.9U7TDI Arachis hypogaea HOM05D005147 ORTHO05D006132 2.7e-33 147.5 464 28.7
CiPaw.08G111700 Carya illinoinensis HOM05D005147 ORTHO05D006132 3.5e-33 147.1 403 32.5
Dinv17137 Davidia involucrata HOM05D005147 ORTHO05D006132 3.5e-33 147.1 394 30.5
Sed0015307 Sechium edule HOM05D005147 ORTHO05D006132 3.5e-33 147.1 405 29.9
arahy.Tifrunner.gnm1.ann1.IZJM3F Arachis hypogaea HOM05D005147 ORTHO05D006132 4.6e-33 146.7 464 28.0
Potri.008G078200 Populus trichocarpa HOM05D005147 ORTHO05D006132 4.6e-33 146.7 284 34.5
GSVIVG01003992001 Vitis vinifera HOM05D005147 ORTHO05D006132 4.6e-33 146.7 285 37.9
Cc09_g04140 Coffea canephora HOM05D005147 ORTHO05D006132 5.9e-33 146.4 390 31.5
Duzib128G1295 Durio zibethinus HOM05D005147 ORTHO05D006132 5.9e-33 146.4 395 30.1
TWI36G1457 Tripterygium wilfordii HOM05D005147 ORTHO05D006132 5.9e-33 146.4 389 29.6
VMungo0720G1244 Vigna mungo HOM05D005147 ORTHO05D006132 5.9e-33 146.4 434 28.1
Lsat_1_v5_gn_1_127920 Lactuca sativa HOM05D005147 ORTHO05D006132 7.8e-33 146.0 454 28.0
PGR119G0204 Punica granatum HOM05D005147 ORTHO05D006132 7.8e-33 146.0 389 29.8
CSS0016526 Camellia sinensis var. sinensis HOM05D005147 ORTHO05D006132 1.0e-32 145.6 430 30.0
MD00G1017100 Malus domestica HOM05D005147 ORTHO05D006132 1.3e-32 145.2 430 30.9
ECA232G4784 Erigeron canadensis HOM05D005147 ORTHO05D006132 1.7e-32 144.8 392 28.8
SMO364G0719 Selaginella moellendorffii HOM05D005147 ORTHO05D006132 1.7e-32 144.8 414 30.2
CsaV3_4G030880 Cucumis sativus L. HOM05D005147 ORTHO05D006132 2.3e-32 144.4 399 29.3
PSO017G2923 Papaver somniferum HOM05D005147 ORTHO05D006132 2.9e-32 144.1 431 30.9
SHI13696 Sapria himalayana HOM05D005147 ORTHO05D006132 2.9e-32 144.1 246 37.4
Glyma.10G171500 Glycine max HOM05D005147 ORTHO05D006132 3.9e-32 143.7 441 27.7
Lj5g0011670 Lotus japonicus HOM05D005147 ORTHO05D006132 3.9e-32 143.7 395 29.1
Sabra08G0058100 Salix brachista HOM05D005147 ORTHO05D006132 3.9e-32 143.7 291 34.0
Aqoxy3G00601 Aquilegia oxysepala HOM05D005147 ORTHO05D006132 6.6e-32 142.9 436 30.5
Sopen11g004480 Solanum pennellii HOM05D005147 ORTHO05D006132 6.6e-32 142.9 396 28.8
Manes.13G000300 Manihot esculenta HOM05D005147 ORTHO05D006132 1.1e-31 142.1 438 29.5
Mapoly0021s0138 Marchantia polymorpha HOM05D005147 ORTHO05D006132 1.5e-31 141.7 412 29.4
Actinidia19646 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.9e-31 141.4 429 29.1
MSTRG.27416 Avicennia marina HOM05D005147 ORTHO05D006132 1.9e-31 141.4 464 29.1
Pp3c20_9510 Physcomitrium patens HOM05D005147 ORTHO05D006132 3.3e-31 140.6 420 29.5
Atru.chr2.212 Acer truncatum HOM05D005147 ORTHO05D006132 4.3e-31 140.2 394 29.4
CARHR197050 Cardamine hirsuta HOM05D005147 ORTHO05D006132 9.5e-31 139.0 349 31.8
AagrBONN_evm.TU.Sc2ySwM_368.1306 Anthoceros agrestis HOM05D005147 ORTHO05D006132 1.6e-30 138.3 285 33.3
FvH4_7g28070 Fragaria vesca HOM05D005147 ORTHO05D001533 1.6e-30 138.3 357 30.3
THA.LOC104820936 Tarenaya hassleriana HOM05D005147 ORTHO05D006132 2.8e-30 137.5 420 30.5
Ciclev10000750m.g Citrus clementina HOM05D005147 ORTHO05D006132 3.6e-30 137.1 345 30.4
CBR_g19604 Chara braunii HOM05D005147 ORTHO05D006132 1.4e-29 135.2 341 29.6
Carub.0006s1445 Capsella rubella HOM05D005147 ORTHO05D006132 1.8e-29 134.8 442 29.2
Nitab4.5_0000798g0160 Nicotiana tabacum HOM05D005147 ORTHO05D006132 2.3e-29 134.4 281 35.2
Sp6g27900 Schrenkiella parvula HOM05D005147 ORTHO05D006132 2.3e-29 134.4 406 29.1
Aa31LG11G13360 Aethionema arabicum HOM05D005147 ORTHO05D006132 3.1e-29 134.0 402 27.9
BcaB08g36860 Brassica carinata HOM05D005147 ORTHO05D006132 4.0e-29 133.7 446 28.7
BraA10t44347Z Brassica rapa HOM05D005147 ORTHO05D006132 5.2e-29 133.3 436 28.0
Oeu040505.2 Olea europaea HOM05D005147 ORTHO05D006132 5.2e-29 133.3 308 33.1
AL6G27150 Arabidopsis lyrata HOM05D005147 ORTHO05D006132 6.8e-29 132.9 427 27.6
BcaC04g18905 Brassica carinata HOM05D005147 ORTHO05D006132 1.2e-28 132.1 444 28.6
BolC9t58914H Brassica oleracea HOM05D005147 ORTHO05D006132 1.2e-28 132.1 444 28.6
Zm00001eb321590 Zea mays HOM05D005147 ORTHO05D006132 1.5e-28 131.7 258 36.4
Lj8A197T41 Lonicera japonica HOM05D005147 ORTHO05D006132 2.0e-28 131.3 300 35.0
AT5G16260 Arabidopsis thaliana HOM05D005147 ORTHO05D006132 2.6e-28 131.0 427 27.4
Thhalv10013396m.g Eutrema salsugineum HOM05D005147 ORTHO05D006132 7.5e-28 129.4 307 31.9
unitig_747.g21462 Utricularia gibba HOM05D005147 ORTHO05D006132 2.9e-27 127.5 460 27.2
FAN06G0735 Fragaria x ananassa HOM05D005147 ORTHO05D006132 3.7e-27 127.1 342 29.2
EL10Ac4g10030 Beta vulgaris HOM05D005147 ORTHO05D006132 3.2e-26 124.0 357 31.1
FvH4_6g00060 Fragaria vesca HOM05D005147 ORTHO05D006132 7.0e-26 122.9 374 29.9
SGA_v2.0_scaffold62G21485 Striga asiatica HOM05D005147 ORTHO05D006132 2.5e-23 114.4 397 27.7
Actinidia05852 Actinidia chinensis HOM05D005147 ORTHO05D006132 3.6e-22 110.5 253 32.0
ClCG04G001690 Citrullus lanatus HOM05D005147 ORTHO05D006132 4.7e-22 110.2 252 32.1
PRCOL_00001696 Prasinoderma coloniale HOM05D005147 ORTHO05D006132 6.2e-22 109.8 358 28.5
FAN06G0198 Fragaria x ananassa HOM05D005147 ORTHO05D006132 8.1e-22 109.4 380 26.1
Zm00001eb058540 Zea mays HOM05D005147 ORTHO05D006132 8.1e-22 109.4 201 35.8
Sabra10G0137300 Salix brachista HOM05D005147 ORTHO05D006132 6.8e-21 106.3 315 29.5
Rhsim05G0163700 Rhododendron simsii HOM05D005147 ORTHO05D006132 1.5e-20 105.1 256 32.4
A10p22800 Brassica napus HOM05D001331 ORTHO05D006132 5.8e-20 103.2 352 27.3
GSVIVG01007182001 Vitis vinifera HOM05D005147 ORTHO05D006132 2.2e-19 101.3 284 32.0
Cpa.g.sc88.4 Carica papaya HOM05D005147 ORTHO05D006132 8.3e-19 99.4 312 27.9
AUR62006615 Chenopodium quinoa HOM05D005147 ORTHO05D006132 9.2e-18 95.9 308 29.5
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 6.0e-17 93.2 177 37.9
Actinidia40010 Actinidia chinensis HOM05D005147 ORTHO05D006132 1.5e-15 88.6 358 26.0
FAN10G0474 Fragaria x ananassa HOM05D005147 ORTHO05D001533 1.8e-13 81.6 368 24.2
Psat6g051880 Pisum sativum HOM05D005147 ORTHO05D006132 1.8e-13 81.6 294 26.5
CDE09G1177 Ceratophyllum demersum HOM05D005147 ORTHO05D006132 4.0e-13 80.5 248 27.4
HPP92_011449 Vanilla planifolia HOM05D005147 ORTHO05D006132 2.6e-12 77.8 218 31.2
Migut.F02087 Erythranthe guttata HOM05D005147 ORTHO05D006132 2.2e-11 74.7 117 39.3
Nitab4.5_0015042g0010 Nicotiana tabacum HOM05D005147 ORTHO05D006132 1.4e-10 72.0 170 30.6
SEGI_33004 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 2.1e-09 68.2 70 44.3
SEGI_04471 Sequoiadendron giganteum HOM05D005147 ORTHO05D006132 1.7e-08 65.1 131 37.4
Cc09_g09810 Coffea canephora HOM05D002097 ORTHO05D002248 1.5e-07 62.0 82 36.6
Aa31LG8G14110 Aethionema arabicum HOM05D000397 ORTHO05D002248 4.3e-07 60.5 131 35.1
Mapoly0067s0005 Marchantia polymorpha HOM05D002097 ORTHO05D002248 9.6e-07 59.3 91 36.3
Lj5C177G7 Lonicera japonica HOM05D002716 ORTHO05D003324 2.1e-06 58.2 82 35.4
CiPaw.05G084300 Carya illinoinensis HOM05D002097 ORTHO05D002248 2.8e-06 57.8 82 36.6
FAN20G3080 Fragaria x ananassa HOM05D000686 ORTHO05D002248 2.8e-06 57.8 82 31.7
Os10g0439600 Oryza sativa ssp. japonica HOM05D002097 ORTHO05D002248 2.8e-06 57.8 81 40.7
Thecc.02G057400 Theobroma cacao HOM05D002097 ORTHO05D002248 2.8e-06 57.8 82 35.4
Ah.01g023150 Amaranthus hybridus HOM05D002097 ORTHO05D002248 3.6e-06 57.4 82 35.4
EL10Ac9g21352 Beta vulgaris HOM05D002097 ORTHO05D002248 3.6e-06 57.4 107 35.5
Actinidia20520 Actinidia chinensis HOM05D002097 ORTHO05D002248 4.7e-06 57.0 82 34.1
Solyc11g005170.2 Solanum lycopersicum HOM05D002097 ORTHO05D002248 4.7e-06 57.0 97 39.2
Sopen11g001170 Solanum pennellii HOM05D002097 ORTHO05D002248 4.7e-06 57.0 97 39.2
CAN.G341.13 Capsicum annuum HOM05D002097 ORTHO05D002248 6.2e-06 56.6 97 38.1
Duzib248G1200 Durio zibethinus HOM05D002097 ORTHO05D002248 6.2e-06 56.6 82 36.6
Thhalv10022624m.g Eutrema salsugineum HOM05D002097 ORTHO05D002248 6.2e-06 56.6 91 36.3
FvH4_2g15540 Fragaria vesca HOM05D002097 ORTHO05D002248 6.2e-06 56.6 82 31.7
FAN24G1581 Fragaria x ananassa HOM05D000686 ORTHO05D000512 6.2e-06 56.6 82 31.7
RcHm_v2.0_Chr6g0278711 Rosa chinensis HOM05D002097 ORTHO05D002248 6.2e-06 56.6 82 31.7
GSVIVG01023998001 Vitis vinifera HOM05D002097 ORTHO05D002248 8.1e-06 56.2 82 35.4


User provided reference genes

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