Gene: Sopen11g001170

General Information

Structural Information

  • Species Solanum pennellii
  • Gene Identifier Sopen11g001170
  • Transcript Identifier Sopen11g001170.2
  • Gene Type Coding gene
  • Location Spenn-ch11 : 162651-171948 : positive

Gene Family Information

  • ID HOM05D002097
  • #Genes/#Species 318/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Sopen11g001170.2

Descriptions

  • Description Splicing factor, CC1-like | FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding | INVOLVED IN: mRNA processing | LOCATED IN: nucleus | EXPRESSED IN: 25 plant structures | EXPRESSED DURING: 15 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Splicing factor, CC1-like , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: Splicing factor, CC1-like
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
IEA
InterPromRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G16940

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
InterPronucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR006509 Splicing factor, RBM39-like
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR029123 Splicing factor RBM39, linker
IPR000504 RNA recognition motif domain
IPR035979 RNA-binding domain superfamily
Mapman id Description
35.1 not assigned.annotated