Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ca_08598_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 6.8e-30 133.3 64 100.0
Sed0000117 Sechium edule HOM05D000563 ORTHO05D006573 1.1e-24 115.9 57 96.5
Actinidia24875 Actinidia chinensis HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Aqoxy2G03235 Aquilegia oxysepala HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
arahy.Tifrunner.gnm1.ann1.VC9ZTT Arachis hypogaea HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
CSS0039726 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
CiPaw.07G094800 Carya illinoinensis HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
CiPaw.08G103000 Carya illinoinensis HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Ca_08564_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Ciclev10023059m.g Citrus clementina HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
MELO3C023545.2 Cucumis melo HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Dinv11258 Davidia involucrata HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Duzib133G0114 Durio zibethinus HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Migut.D00260 Erythranthe guttata HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Eucgr.K03403 Eucalyptus grandis HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Gohir.D08G079000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Gohir.D11G125000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Gorai.004G083500 Gossypium raimondii HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Gorai.007G134200 Gossypium raimondii HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Lalb_Chr02g0142891 Lupinus albus HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Lalb_Chr21g0306571 Lupinus albus HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Manes.01G210300 Manihot esculenta HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Manes.05G073100 Manihot esculenta HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Medtr7g104700 Medicago truncatula HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
PSO210G0485 Papaver somniferum HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
PSO832G0267 Papaver somniferum HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Phvul.001G148500 Phaseolus vulgaris HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Psat0s3362g0080 Pisum sativum HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
PGR044G0879 Punica granatum HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
QL12p022805 Quercus lobata HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Thecc.01G284300 Theobroma cacao HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
TWI23G1003 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
TWI59G0344 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
GSVIVG01011077001 Vitis vinifera HOM05D000563 ORTHO05D006573 3.3e-24 114.4 56 96.4
Sabra01G0166100 Salix brachista HOM05D000563 ORTHO05D006573 5.6e-24 113.6 55 98.2
TPR.G29312 Trifolium pratense HOM05D000563 ORTHO05D006573 5.6e-24 113.6 55 98.2
DCAR_018402 Daucus carota HOM05D000563 ORTHO05D006573 7.3e-24 113.2 54 100.0
Gohir.A08G069900 Gossypium hirsutum HOM05D000563 ORTHO05D006573 7.3e-24 113.2 56 94.6
Medtr7g094500 Medicago truncatula HOM05D000563 ORTHO05D006573 7.3e-24 113.2 56 94.6
Potri.003G014900 Populus trichocarpa HOM05D000563 ORTHO05D006573 7.3e-24 113.2 56 94.6
Potri.004G219000 Populus trichocarpa HOM05D000563 ORTHO05D006573 7.3e-24 113.2 56 94.6
SalBow6G0934 Salvia bowleyana HOM05D000563 ORTHO05D006573 7.3e-24 113.2 54 100.0
AL1G12840 Arabidopsis lyrata HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
AT1G03330 Arabidopsis thaliana HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
BcaC05g24542 Brassica carinata HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
BcaC05g24543 Brassica carinata HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
Carub.0001s0244 Capsella rubella HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
CARHR002640 Cardamine hirsuta HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
CARHR002690 Cardamine hirsuta HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
MELO3C028853.2 Cucumis melo HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
CsaV3_7G031130 Cucumis sativus L. HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
ECA248G1345 Erigeron canadensis HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
Thhalv10009199m.g Eutrema salsugineum HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
FvH4_3g16480 Fragaria vesca HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
FAN11G3431 Fragaria x ananassa HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
FAN16G1803 Fragaria x ananassa HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
FAN21G1624 Fragaria x ananassa HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
HanXRQChr01g0002411 Helianthus annuus HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
MD05G1209800 Malus domestica HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
MD10G1196100 Malus domestica HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
RcHm_v2.0_Chr5g0027471 Rosa chinensis HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
Sp1g02320 Schrenkiella parvula HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
THA.LOC104801217 Tarenaya hassleriana HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
TAR362G0386 Trochodendron aralioides HOM05D000563 ORTHO05D006573 9.5e-24 112.8 54 100.0
TAR365G0146 Trochodendron aralioides HOM05D000563 ORTHO05D006573 9.5e-24 112.8 56 94.6
Atru.chr5.1355 Acer truncatum HOM05D000563 ORTHO05D006573 1.2e-23 112.5 55 96.4
Cpa.g.sc50.145 Carica papaya HOM05D000563 ORTHO05D000536 1.2e-23 112.5 55 96.4
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 1.2e-23 112.5 55 96.4
ClCG09G008910 Citrullus lanatus HOM05D000563 ORTHO05D006573 1.2e-23 112.5 55 96.4
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 1.2e-23 112.5 55 96.4
Nn4g26163 Nelumbo nucifera HOM05D000563 ORTHO05D006573 1.2e-23 112.5 55 96.4
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 1.2e-23 112.5 55 96.4
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 1.2e-23 112.5 54 98.1
vmacro14940 Vaccinium macrocarpon HOM05D000563 ORTHO05D006573 1.2e-23 112.5 55 96.4
Nitab4.5_0001323g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 1.6e-23 112.1 54 98.1
Nitab4.5_0006874g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 1.6e-23 112.1 54 98.1
Solyc09g072970.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 1.6e-23 112.1 54 98.1
Sopen09g028780 Solanum pennellii HOM05D000563 ORTHO05D006573 1.6e-23 112.1 54 98.1
PGSC0003DMG400003836 Solanum tuberosum HOM05D000563 ORTHO05D006573 1.6e-23 112.1 54 98.1
TPR.G20367 Trifolium pratense HOM05D000563 ORTHO05D006573 1.6e-23 112.1 54 98.1
CANSAT56G4364 Cannabis sativa HOM05D000563 ORTHO05D006573 2.1e-23 111.7 56 92.9
Nn1g02139 Nelumbo nucifera HOM05D000563 ORTHO05D006573 2.1e-23 111.7 56 92.9
Os08g0154700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D006573 2.1e-23 111.7 56 92.9
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 2.1e-23 111.7 53 100.0
Zm00001eb172640 Zea mays HOM05D000563 ORTHO05D006573 2.1e-23 111.7 56 92.9
Zm00001eb416130 Zea mays HOM05D000563 ORTHO05D006573 2.1e-23 111.7 56 92.9
BcaC07g36971 Brassica carinata HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
A08p37390 Brassica napus HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
C08p00530 Brassica napus HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
BolC5t28963H Brassica oleracea HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
BolC8t46853H Brassica oleracea HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
BraA08t35636Z Brassica rapa HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
HanXRQChr15g0466481 Helianthus annuus HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
Prupe.4G147700 Prunus persica HOM05D000563 ORTHO05D006573 2.8e-23 111.3 56 92.9
Solyc06g084350.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 2.8e-23 111.3 54 96.3
Sopen06g035740 Solanum pennellii HOM05D000563 ORTHO05D006573 2.8e-23 111.3 54 96.3
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 3.6e-23 110.9 55 94.5
A10p01870 Brassica napus HOM05D000563 ORTHO05D006573 3.6e-23 110.9 55 94.5
BraA10t42461Z Brassica rapa HOM05D000563 ORTHO05D006573 3.6e-23 110.9 55 94.5
Duzib138G0853 Durio zibethinus HOM05D000563 ORTHO05D006573 3.6e-23 110.9 56 94.6
Hma1.2p1_0628F.1_g191850 Hydrangea macrophylla HOM05D000563 ORTHO05D006573 3.6e-23 110.9 55 94.5
BcaB03g16569 Brassica carinata HOM05D000563 ORTHO05D006573 4.7e-23 110.5 56 92.9
CAN.G1679.5 Capsicum annuum HOM05D000563 ORTHO05D006573 4.7e-23 110.5 53 98.1
Duzib211G0084 Durio zibethinus HOM05D000563 ORTHO05D006573 4.7e-23 110.5 55 94.5
Sabra03G0008000 Salix brachista HOM05D000563 ORTHO05D006573 4.7e-23 110.5 55 92.7
Lsat_1_v5_gn_5_187481 Lactuca sativa HOM05D000563 ORTHO05D006573 6.1e-23 110.2 56 91.1
Peaxi162Scf00980g00016 Petunia axillaris HOM05D000563 ORTHO05D006573 1.0e-22 109.4 55 92.7
unitig_26.g10157 Utricularia gibba HOM05D000563 ORTHO05D006573 1.0e-22 109.4 55 92.7
HPP92_004165 Vanilla planifolia HOM05D000563 ORTHO05D006573 1.0e-22 109.4 56 91.1
Cc01_g19800 Coffea canephora HOM05D000563 ORTHO05D006573 1.4e-22 109.0 55 92.7
FAN25G0039 Fragaria x ananassa HOM05D000563 ORTHO05D006573 1.4e-22 109.0 55 92.7
Nitab4.5_0007767g0050 Nicotiana tabacum HOM05D000563 ORTHO05D006573 1.8e-22 108.6 56 89.3
EL10Ac2g04686 Beta vulgaris HOM05D000563 ORTHO05D006573 2.3e-22 108.2 62 83.9
MBI19_g06754_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 3.0e-22 107.8 56 89.3
MBI19_g44975_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 3.0e-22 107.8 56 89.3
AagrBONN_evm.TU.Sc2ySwM_344.5103 Anthoceros agrestis HOM05D000563 ORTHO05D006573 4.0e-22 107.5 56 89.3
AUR62011805 Chenopodium quinoa HOM05D000563 ORTHO05D006573 5.2e-22 107.1 56 89.3
AUR62024651 Chenopodium quinoa HOM05D000563 ORTHO05D006573 5.2e-22 107.1 56 89.3
Hund22131 Selenicereus undatus HOM05D000563 ORTHO05D006573 5.2e-22 107.1 56 89.3
Ah.11g049240 Amaranthus hybridus HOM05D000563 ORTHO05D006573 8.9e-22 106.3 55 90.9
Ah.02g112280 Amaranthus hybridus HOM05D000563 ORTHO05D006573 1.2e-21 105.9 56 87.5
ATR0626G009 Amborella trichopoda HOM05D000563 ORTHO05D006573 1.2e-21 105.9 56 85.7
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 1.2e-21 105.9 56 87.5
Mapoly0002s0343 Marchantia polymorpha HOM05D000563 ORTHO05D006573 1.5e-21 105.5 56 87.5
Glyma.03G150900 Glycine max HOM05D000563 ORTHO05D006573 2.0e-21 105.1 56 87.5
Glyma.19G153500 Glycine max HOM05D000563 ORTHO05D006573 2.0e-21 105.1 56 87.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 2.0e-21 105.1 55 89.1
MBI17_g11989_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 3.4e-21 104.4 56 85.7
SalBow4G1726 Salvia bowleyana HOM05D000563 ORTHO05D006573 4.4e-21 104.0 61 85.2
CDE11G0229 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 9.8e-21 102.8 56 82.1
CDE11G0885 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 9.8e-21 102.8 56 82.1
AUR62041552 Chenopodium quinoa HOM05D000563 ORTHO05D006573 2.2e-20 101.7 59 83.1
TPR.G37604 Trifolium pratense HOM05D000563 ORTHO05D006573 2.2e-20 101.7 50 98.0
CDE05G0374 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 3.7e-20 100.9 56 80.4
Pp3c2_19710 Physcomitrium patens HOM05D000563 ORTHO05D006573 6.4e-20 100.1 56 83.9
SMO146G0171 Selaginella moellendorffii HOM05D000563 ORTHO05D006573 1.1e-19 99.4 56 82.1
arahy.Tifrunner.gnm1.ann1.A338HQ Arachis hypogaea HOM05D000563 ORTHO05D006573 2.4e-19 98.2 48 95.8
Nitab4.5_0002093g0040 Nicotiana tabacum HOM05D000563 ORTHO05D006573 7.8e-18 93.2 48 89.6
Cre10.g441950 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D006573 3.0e-17 91.3 56 76.8
PRCOL_00001823 Prasinoderma coloniale HOM05D000563 ORTHO05D006573 1.9e-16 88.6 56 66.1
PGSC0003DMG400020045 Solanum tuberosum HOM05D000563 ORTHO05D006573 2.5e-16 88.2 45 91.1
BcaB01g01720 Brassica carinata HOM05D005272 ORTHO05D006573 6.2e-15 83.6 44 93.2
Gohir.A11G120250 Gossypium hirsutum HOM05D000563 ORTHO05D006573 4.1e-11 70.9 34 100.0


User provided reference genes

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