Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
arahy.Tifrunner.gnm1.ann1.VC9ZTT Arachis hypogaea HOM05D000563 ORTHO05D006573 8.1e-48 193.4 94 100.0
CiPaw.08G103000 Carya illinoinensis HOM05D000563 ORTHO05D006573 8.1e-48 193.4 94 100.0
Ca_08564_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 8.1e-48 193.4 94 100.0
Migut.D00260 Erythranthe guttata HOM05D000563 ORTHO05D006573 8.1e-48 193.4 94 100.0
CiPaw.07G094800 Carya illinoinensis HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 98.9
Dinv11258 Davidia involucrata HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 98.9
Medtr7g104700 Medicago truncatula HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 98.9
Phvul.001G148500 Phaseolus vulgaris HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 98.9
Psat0s3362g0080 Pisum sativum HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 98.9
GSVIVG01011077001 Vitis vinifera HOM05D000563 ORTHO05D006573 1.1e-47 193.0 94 98.9
QL12p022805 Quercus lobata HOM05D000563 ORTHO05D006573 1.4e-47 192.6 93 98.9
MELO3C023545.2 Cucumis melo HOM05D000563 ORTHO05D006573 1.8e-47 192.2 94 98.9
Lalb_Chr02g0142891 Lupinus albus HOM05D000563 ORTHO05D006573 1.8e-47 192.2 94 97.9
Lalb_Chr21g0306571 Lupinus albus HOM05D000563 ORTHO05D006573 1.8e-47 192.2 94 97.9
PSO210G0485 Papaver somniferum HOM05D000563 ORTHO05D006573 1.8e-47 192.2 94 98.9
PSO832G0267 Papaver somniferum HOM05D000563 ORTHO05D006573 1.8e-47 192.2 94 98.9
Actinidia24875 Actinidia chinensis HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
CSS0039726 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
Duzib133G0114 Durio zibethinus HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
Eucgr.K03403 Eucalyptus grandis HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
FvH4_3g16480 Fragaria vesca HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 98.9
FAN11G3431 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 98.9
FAN16G1803 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 98.9
FAN21G1624 Fragaria x ananassa HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 98.9
Gohir.D08G079000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
Gorai.004G083500 Gossypium raimondii HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
Manes.01G210300 Manihot esculenta HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
Manes.05G073100 Manihot esculenta HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
Medtr7g094500 Medicago truncatula HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
PGR044G0879 Punica granatum HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
RcHm_v2.0_Chr5g0027471 Rosa chinensis HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 98.9
Thecc.01G284300 Theobroma cacao HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
TWI23G1003 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 2.4e-47 191.8 94 97.9
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 3.1e-47 191.4 93 100.0
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 4.0e-47 191.0 93 98.9
Ciclev10023059m.g Citrus clementina HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 97.9
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 4.0e-47 191.0 93 98.9
MD05G1209800 Malus domestica HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 97.9
MD10G1196100 Malus domestica HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 97.9
Potri.003G014900 Populus trichocarpa HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 97.9
Potri.004G219000 Populus trichocarpa HOM05D000563 ORTHO05D006573 4.0e-47 191.0 94 97.9
Aqoxy2G03235 Aquilegia oxysepala HOM05D000563 ORTHO05D006573 5.3e-47 190.7 94 97.9
CANSAT56G4364 Cannabis sativa HOM05D000563 ORTHO05D006573 5.3e-47 190.7 94 97.9
CsaV3_7G031130 Cucumis sativus L. HOM05D000563 ORTHO05D006573 5.3e-47 190.7 94 97.9
ECA248G1345 Erigeron canadensis HOM05D000563 ORTHO05D006573 5.3e-47 190.7 94 96.8
Gohir.A08G069900 Gossypium hirsutum HOM05D000563 ORTHO05D006573 5.3e-47 190.7 94 96.8
MELO3C028853.2 Cucumis melo HOM05D000563 ORTHO05D006573 6.9e-47 190.3 94 96.8
HanXRQChr01g0002411 Helianthus annuus HOM05D000563 ORTHO05D006573 6.9e-47 190.3 94 96.8
Prupe.4G147700 Prunus persica HOM05D000563 ORTHO05D006573 6.9e-47 190.3 94 97.9
TAR365G0146 Trochodendron aralioides HOM05D000563 ORTHO05D006573 6.9e-47 190.3 94 97.9
ClCG09G008910 Citrullus lanatus HOM05D000563 ORTHO05D006573 9.0e-47 189.9 93 97.8
CARHR002640 Cardamine hirsuta HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
TWI59G0344 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 1.2e-46 189.5 94 96.8
Atru.chr5.1355 Acer truncatum HOM05D000563 ORTHO05D006573 1.5e-46 189.1 93 97.8
Nn4g26163 Nelumbo nucifera HOM05D000563 ORTHO05D006573 2.0e-46 188.7 93 96.8
Duzib138G0853 Durio zibethinus HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 96.8
Nitab4.5_0006874g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
Solyc09g072970.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
PGSC0003DMG400003836 Solanum tuberosum HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
THA.LOC104801217 Tarenaya hassleriana HOM05D000563 ORTHO05D006573 2.6e-46 188.3 94 95.7
CARHR002690 Cardamine hirsuta HOM05D000563 ORTHO05D006573 3.4e-46 188.0 94 95.7
Duzib211G0084 Durio zibethinus HOM05D000563 ORTHO05D006573 3.4e-46 188.0 93 96.8
FAN25G0039 Fragaria x ananassa HOM05D000563 ORTHO05D006573 3.4e-46 188.0 93 97.8
BcaC05g24542 Brassica carinata HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
BcaC05g24543 Brassica carinata HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Carub.0001s0244 Capsella rubella HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Cc01_g19800 Coffea canephora HOM05D000563 ORTHO05D006573 4.4e-46 187.6 93 96.8
Thhalv10009199m.g Eutrema salsugineum HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Gorai.007G134200 Gossypium raimondii HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 96.8
HanXRQChr15g0466481 Helianthus annuus HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 94.7
Nn1g02139 Nelumbo nucifera HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Sp1g02320 Schrenkiella parvula HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 95.7
Solyc06g084350.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 94.7
Sopen06g035740 Solanum pennellii HOM05D000563 ORTHO05D006573 4.4e-46 187.6 94 94.7
vmacro14940 Vaccinium macrocarpon HOM05D000563 ORTHO05D006573 4.4e-46 187.6 93 96.8
Nitab4.5_0007767g0050 Nicotiana tabacum HOM05D000563 ORTHO05D006573 5.8e-46 187.2 94 94.7
Sabra03G0008000 Salix brachista HOM05D000563 ORTHO05D006573 5.8e-46 187.2 93 95.7
Sopen09g028780 Solanum pennellii HOM05D000563 ORTHO05D006573 5.8e-46 187.2 94 94.7
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 7.6e-46 186.8 93 96.8
Hma1.2p1_0628F.1_g191850 Hydrangea macrophylla HOM05D000563 ORTHO05D006573 7.6e-46 186.8 91 97.8
unitig_26.g10157 Utricularia gibba HOM05D000563 ORTHO05D006573 7.6e-46 186.8 93 96.8
CAN.G1679.5 Capsicum annuum HOM05D000563 ORTHO05D006573 9.9e-46 186.4 93 95.7
BolC5t28963H Brassica oleracea HOM05D000563 ORTHO05D006573 1.3e-45 186.0 94 94.7
Lsat_1_v5_gn_5_187481 Lactuca sativa HOM05D000563 ORTHO05D006573 1.3e-45 186.0 92 95.7
Peaxi162Scf00980g00016 Petunia axillaris HOM05D000563 ORTHO05D006573 1.3e-45 186.0 93 94.6
A10p01870 Brassica napus HOM05D000563 ORTHO05D006573 1.7e-45 185.7 93 95.7
BraA10t42461Z Brassica rapa HOM05D000563 ORTHO05D006573 1.7e-45 185.7 93 95.7
BcaB03g16569 Brassica carinata HOM05D000563 ORTHO05D006573 2.2e-45 185.3 94 94.7
AUR62011805 Chenopodium quinoa HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 94.7
AUR62024651 Chenopodium quinoa HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 94.7
Gohir.D11G125000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 2.9e-45 184.9 91 97.8
HPP92_004165 Vanilla planifolia HOM05D000563 ORTHO05D006573 2.9e-45 184.9 94 92.6
AL1G12840 Arabidopsis lyrata HOM05D000563 ORTHO05D006573 3.8e-45 184.5 94 94.7
AT1G03330 Arabidopsis thaliana HOM05D000563 ORTHO05D006573 3.8e-45 184.5 94 94.7
Ah.02g112280 Amaranthus hybridus HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
BcaC07g36971 Brassica carinata HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
A08p37390 Brassica napus HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
C08p00530 Brassica napus HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
BolC8t46853H Brassica oleracea HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
BraA08t35636Z Brassica rapa HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
Glyma.03G150900 Glycine max HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
Glyma.19G153500 Glycine max HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 93.6
Hund22131 Selenicereus undatus HOM05D000563 ORTHO05D006573 6.4e-45 183.7 94 92.6
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 1.9e-44 182.2 93 93.5
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 2.4e-44 181.8 94 91.5
Zm00001eb416130 Zea mays HOM05D000563 ORTHO05D006573 2.4e-44 181.8 94 92.6
Os08g0154700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D006573 3.2e-44 181.4 94 91.5
Zm00001eb172640 Zea mays HOM05D000563 ORTHO05D006573 3.2e-44 181.4 94 91.5
MBI19_g06754_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 89.4
MBI19_g44975_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 7.1e-44 180.3 94 89.4
Nitab4.5_0001323g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 7.1e-44 180.3 91 94.5
AagrBONN_evm.TU.Sc2ySwM_344.5103 Anthoceros agrestis HOM05D000563 ORTHO05D006573 9.3e-44 179.9 94 90.4
MBI17_g11989_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.6e-43 179.1 94 88.3
CDE11G0229 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 87.2
CDE11G0885 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 2.7e-43 178.3 94 87.2
Mapoly0002s0343 Marchantia polymorpha HOM05D000563 ORTHO05D006573 4.6e-43 177.6 92 90.2
ATR0626G009 Amborella trichopoda HOM05D000563 ORTHO05D006573 6.0e-43 177.2 94 89.4
arahy.Tifrunner.gnm1.ann1.A338HQ Arachis hypogaea HOM05D000563 ORTHO05D006573 6.0e-43 177.2 86 100.0
CDE05G0374 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 1.0e-42 176.4 94 86.2
Pp3c2_19710 Physcomitrium patens HOM05D000563 ORTHO05D006573 3.0e-42 174.9 94 88.3
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 1.9e-41 172.2 103 83.5
Nitab4.5_0002093g0040 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.5e-41 171.8 86 95.3
SMO146G0171 Selaginella moellendorffii HOM05D000563 ORTHO05D006573 2.1e-40 168.7 94 85.1
PGSC0003DMG400020045 Solanum tuberosum HOM05D000563 ORTHO05D006573 5.3e-39 164.1 85 91.8
Sabra01G0166100 Salix brachista HOM05D000563 ORTHO05D006573 6.9e-39 163.7 154 59.7
Cre10.g441950 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D006573 3.4e-38 161.4 94 83.0
EL10Ac2g04686 Beta vulgaris HOM05D000563 ORTHO05D006573 3.8e-37 157.9 152 57.9
PRCOL_00001823 Prasinoderma coloniale HOM05D000563 ORTHO05D006573 7.9e-35 150.2 92 73.9
TPR.G37604 Trifolium pratense HOM05D000563 ORTHO05D006573 1.0e-34 149.8 134 61.9
Ah.11g049240 Amaranthus hybridus HOM05D000563 ORTHO05D006573 1.5e-33 146.0 184 48.4
Cpa.g.sc50.145 Carica papaya HOM05D000563 ORTHO05D000536 2.6e-30 135.2 65 100.0
SalBow6G0934 Salvia bowleyana HOM05D000563 ORTHO05D006573 2.8e-24 115.2 80 75.0
TPR.G29312 Trifolium pratense HOM05D000563 ORTHO05D006573 4.8e-24 114.4 70 78.6
Ca_08598_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 8.2e-24 113.6 56 96.4
DCAR_018402 Daucus carota HOM05D000563 ORTHO05D006573 1.4e-23 112.8 54 100.0
Sed0000117 Sechium edule HOM05D000563 ORTHO05D006573 3.1e-23 111.7 55 96.4
TPR.G20367 Trifolium pratense HOM05D000563 ORTHO05D006573 3.1e-23 111.7 54 98.1
TAR362G0386 Trochodendron aralioides HOM05D000563 ORTHO05D006573 4.0e-23 111.3 54 98.1
Rhsim01G0276800 Rhododendron simsii HOM05D000563 ORTHO05D000536 5.3e-23 110.9 53 100.0
SalBow4G1726 Salvia bowleyana HOM05D000563 ORTHO05D006573 4.5e-22 107.8 83 66.3
AUR62041552 Chenopodium quinoa HOM05D000563 ORTHO05D006573 3.5e-19 98.2 54 87.0
Oeu011172.1 Olea europaea HOM05D000563 ORTHO05D006573 3.1e-15 85.1 40 97.5
BcaB01g01720 Brassica carinata HOM05D005272 ORTHO05D006573 1.2e-14 83.2 44 93.2
CSS0020898 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 1.2e-14 83.2 40 95.0
MELO3C029155.2 Cucumis melo HOM05D000563 ORTHO05D006573 3.4e-14 81.6 43 86.0
Actinidia24317 Actinidia chinensis HOM05D000563 ORTHO05D006573 5.9e-14 80.9 40 92.5
MBI17_g11991_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 2.2e-13 79.0 43 79.1
MBI17_g11992_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.6e-11 72.8 43 69.8
Gohir.A11G120250 Gossypium hirsutum HOM05D000563 ORTHO05D006573 6.1e-11 70.9 34 100.0
Pp3c11_10290 Physcomitrium patens HOM05D021114 ORTHO05D018332 7.7e-06 53.9 78 37.2


User provided reference genes

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