Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0020898 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 1.7e-41 172.2 83 100.0
EL10Ac2g04686 Beta vulgaris HOM05D000563 ORTHO05D006573 9.4e-16 86.7 44 93.2
HanXRQChr01g0002411 Helianthus annuus HOM05D000563 ORTHO05D006573 1.2e-15 86.3 44 93.2
Actinidia24875 Actinidia chinensis HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
CSS0039726 Camellia sinensis var. sinensis HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
ClCG09G008910 Citrullus lanatus HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
MELO3C028853.2 Cucumis melo HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Duzib133G0114 Durio zibethinus HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Duzib138G0853 Durio zibethinus HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Duzib211G0084 Durio zibethinus HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Eucgr.K03403 Eucalyptus grandis HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Gohir.A08G069900 Gossypium hirsutum HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Gohir.D08G079000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Gorai.004G083500 Gossypium raimondii HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
PGR044G0879 Punica granatum HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Thecc.01G284300 Theobroma cacao HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
TWI23G1003 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 2.1e-15 85.5 40 100.0
Ah.02g112280 Amaranthus hybridus HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
Ah.11g049240 Amaranthus hybridus HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
AUR62011805 Chenopodium quinoa HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
AUR62024651 Chenopodium quinoa HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
MELO3C023545.2 Cucumis melo HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
CsaV3_7G031130 Cucumis sativus L. HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
PSO210G0485 Papaver somniferum HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
PSO832G0267 Papaver somniferum HOM05D000563 ORTHO05D006573 2.7e-15 85.1 40 97.5
Nitab4.5_0002093g0040 Nicotiana tabacum HOM05D000563 ORTHO05D006573 3.6e-15 84.7 44 90.9
Nitab4.5_0007767g0050 Nicotiana tabacum HOM05D000563 ORTHO05D006573 3.6e-15 84.7 44 90.9
Oeu011172.1 Olea europaea HOM05D000563 ORTHO05D006573 3.6e-15 84.7 39 97.4
Peaxi162Scf00980g00016 Petunia axillaris HOM05D000563 ORTHO05D006573 3.6e-15 84.7 40 97.5
Hund22131 Selenicereus undatus HOM05D000563 ORTHO05D006573 3.6e-15 84.7 40 97.5
HanXRQChr15g0466481 Helianthus annuus HOM05D000563 ORTHO05D006573 4.7e-15 84.3 40 97.5
Nn4g26163 Nelumbo nucifera HOM05D000563 ORTHO05D006573 4.7e-15 84.3 40 97.5
Sc24g0004090 Simmondsia chinensis HOM05D004227 ORTHO05D005027 4.7e-15 84.3 40 95.0
Atru.chr5.1355 Acer truncatum HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 95.0
CARHR002640 Cardamine hirsuta HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 95.0
Cfa006100 Carpinus fangiana HOM05D000563 ORTHO05D000536 6.1e-15 84.0 40 97.5
CiPaw.07G094800 Carya illinoinensis HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Ciclev10023059m.g Citrus clementina HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 95.0
Cc01_g19800 Coffea canephora HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Haze_04755 Corylus avellana HOM05D000563 ORTHO05D000536 6.1e-15 84.0 40 97.5
Dinv11258 Davidia involucrata HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
ECA248G1345 Erigeron canadensis HOM05D000563 ORTHO05D006573 6.1e-15 84.0 44 88.6
Glyma.03G150900 Glycine max HOM05D000563 ORTHO05D006573 6.1e-15 84.0 54 75.9
Glyma.19G153500 Glycine max HOM05D000563 ORTHO05D006573 6.1e-15 84.0 54 75.9
Medtr7g094500 Medicago truncatula HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Medtr7g104700 Medicago truncatula HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Phvul.001G148500 Phaseolus vulgaris HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Psat0s3362g0080 Pisum sativum HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Sabra03G0008000 Salix brachista HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 95.0
GSVIVG01011077001 Vitis vinifera HOM05D000563 ORTHO05D006573 6.1e-15 84.0 40 97.5
Aqoxy2G03235 Aquilegia oxysepala HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 97.5
arahy.Tifrunner.gnm1.ann1.A338HQ Arachis hypogaea HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
arahy.Tifrunner.gnm1.ann1.VC9ZTT Arachis hypogaea HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
CANSAT56G4364 Cannabis sativa HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
CAN.G1679.5 Capsicum annuum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 100.0
CiPaw.08G103000 Carya illinoinensis HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
CDE05G0374 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
CDE11G0229 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
CDE11G0885 Ceratophyllum demersum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
Ca_08564_v3 Cicer arietinum L. HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
Migut.D00260 Erythranthe guttata HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
FvH4_3g16480 Fragaria vesca HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
FAN11G3431 Fragaria x ananassa HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
FAN16G1803 Fragaria x ananassa HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
FAN21G1624 Fragaria x ananassa HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
FAN25G0039 Fragaria x ananassa HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
Nitab4.5_0006874g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 100.0
Prupe.4G147700 Prunus persica HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
QL12p022805 Quercus lobata HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 97.4
RcHm_v2.0_Chr5g0027471 Rosa chinensis HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
Solyc06g084350.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 100.0
Solyc09g072970.3 Solanum lycopersicum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 100.0
Sopen06g035740 Solanum pennellii HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 100.0
PGSC0003DMG400003836 Solanum tuberosum HOM05D000563 ORTHO05D006573 8.0e-15 83.6 39 100.0
SGA_v2.0_scaffold11G05791 Striga asiatica HOM05D000563 ORTHO05D000536 8.0e-15 83.6 40 95.0
THA.LOC104801217 Tarenaya hassleriana HOM05D000563 ORTHO05D006573 8.0e-15 83.6 44 86.4
HPP92_004165 Vanilla planifolia HOM05D000563 ORTHO05D006573 8.0e-15 83.6 40 95.0
Lalb_Chr02g0142891 Lupinus albus HOM05D000563 ORTHO05D006573 1.0e-14 83.2 40 95.0
Lalb_Chr21g0306571 Lupinus albus HOM05D000563 ORTHO05D006573 1.0e-14 83.2 40 95.0
SEGI_10645 Sequoiadendron giganteum HOM05D000563 ORTHO05D006573 1.0e-14 83.2 40 92.5
TWI59G0344 Tripterygium wilfordii HOM05D000563 ORTHO05D006573 1.0e-14 83.2 40 97.5
vmacro14940 Vaccinium macrocarpon HOM05D000563 ORTHO05D006573 1.0e-14 83.2 40 97.5
MELO3C029155.2 Cucumis melo HOM05D000563 ORTHO05D006573 1.4e-14 82.8 39 97.4
MBI17_g11989_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.4e-14 82.8 40 92.5
MD05G1209800 Malus domestica HOM05D000563 ORTHO05D006573 1.4e-14 82.8 40 92.5
MD10G1196100 Malus domestica HOM05D000563 ORTHO05D006573 1.4e-14 82.8 40 92.5
Manes.01G210300 Manihot esculenta HOM05D000563 ORTHO05D006573 1.4e-14 82.8 40 95.0
Manes.05G073100 Manihot esculenta HOM05D000563 ORTHO05D006573 1.4e-14 82.8 40 95.0
PGSC0003DMG400020045 Solanum tuberosum HOM05D000563 ORTHO05D006573 1.4e-14 82.8 54 75.9
Actinidia24317 Actinidia chinensis HOM05D000563 ORTHO05D006573 1.8e-14 82.4 48 85.4
CARHR002690 Cardamine hirsuta HOM05D000563 ORTHO05D006573 1.8e-14 82.4 40 92.5
Potri.003G014900 Populus trichocarpa HOM05D000563 ORTHO05D006573 1.8e-14 82.4 40 92.5
Potri.004G219000 Populus trichocarpa HOM05D000563 ORTHO05D006573 1.8e-14 82.4 40 92.5
Sabra01G0166100 Salix brachista HOM05D000563 ORTHO05D006573 1.8e-14 82.4 40 92.5
Sopen09g028780 Solanum pennellii HOM05D000563 ORTHO05D006573 1.8e-14 82.4 39 97.4
BcaB03g16569 Brassica carinata HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
BcaC05g24542 Brassica carinata HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
BcaC05g24543 Brassica carinata HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
A10p01870 Brassica napus HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
BolC5t28963H Brassica oleracea HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
BraA10t42461Z Brassica rapa HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
Carub.0001s0244 Capsella rubella HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
Thhalv10009199m.g Eutrema salsugineum HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
Lsat_1_v5_gn_5_187481 Lactuca sativa HOM05D000563 ORTHO05D006573 2.3e-14 82.0 42 90.5
Pp3c2_19710 Physcomitrium patens HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 90.0
Sp1g02320 Schrenkiella parvula HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 92.5
unitig_26.g10157 Utricularia gibba HOM05D000563 ORTHO05D006573 2.3e-14 82.0 40 95.0
Hma1.2p1_0628F.1_g191850 Hydrangea macrophylla HOM05D000563 ORTHO05D006573 4.0e-14 81.3 38 97.4
Nn1g02139 Nelumbo nucifera HOM05D000563 ORTHO05D006573 4.0e-14 81.3 40 95.0
TAR365G0146 Trochodendron aralioides HOM05D000563 ORTHO05D006573 5.2e-14 80.9 54 74.1
Aa31LG1G9230 Aethionema arabicum HOM05D000280 ORTHO05D003998 6.8e-14 80.5 40 90.0
BcaC07g36971 Brassica carinata HOM05D000563 ORTHO05D006573 6.8e-14 80.5 44 84.1
A08p37390 Brassica napus HOM05D000563 ORTHO05D006573 6.8e-14 80.5 44 84.1
C08p00530 Brassica napus HOM05D000563 ORTHO05D006573 6.8e-14 80.5 44 84.1
BolC8t46853H Brassica oleracea HOM05D000563 ORTHO05D006573 6.8e-14 80.5 44 84.1
BraA08t35636Z Brassica rapa HOM05D000563 ORTHO05D006573 6.8e-14 80.5 44 84.1
MBI19_g06754_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 6.8e-14 80.5 40 90.0
MBI19_g44975_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 6.8e-14 80.5 40 90.0
AagrBONN_evm.TU.Sc2ySwM_344.5103 Anthoceros agrestis HOM05D000563 ORTHO05D006573 1.2e-13 79.7 40 87.5
MBI17_g11991_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 1.5e-13 79.3 40 87.5
Mapoly0002s0343 Marchantia polymorpha HOM05D000563 ORTHO05D006573 1.5e-13 79.3 38 89.5
AL1G12840 Arabidopsis lyrata HOM05D000563 ORTHO05D006573 2.0e-13 79.0 40 90.0
AT1G03330 Arabidopsis thaliana HOM05D000563 ORTHO05D006573 2.0e-13 79.0 40 90.0
Gorai.007G134200 Gossypium raimondii HOM05D000563 ORTHO05D006573 2.6e-13 78.6 40 92.5
Os08g0154700 Oryza sativa ssp. japonica HOM05D000563 ORTHO05D006573 4.4e-13 77.8 40 90.0
Zm00001eb172640 Zea mays HOM05D000563 ORTHO05D006573 4.4e-13 77.8 40 90.0
ATR0626G009 Amborella trichopoda HOM05D000563 ORTHO05D006573 5.7e-13 77.4 54 72.2
Zm00001eb416130 Zea mays HOM05D000563 ORTHO05D006573 5.7e-13 77.4 40 87.5
SMO146G0171 Selaginella moellendorffii HOM05D000563 ORTHO05D006573 9.8e-13 76.6 40 85.0
Cre10.g441950 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D006573 1.3e-12 76.3 40 85.0
Gohir.D11G125000 Gossypium hirsutum HOM05D000563 ORTHO05D006573 1.7e-12 75.9 37 94.6
TPR.G37604 Trifolium pratense HOM05D000563 ORTHO05D006573 1.7e-12 75.9 38 92.1
Nitab4.5_0001323g0030 Nicotiana tabacum HOM05D000563 ORTHO05D006573 2.2e-12 75.5 36 97.2
SGA_v2.0_scaffold1G00443 Striga asiatica HOM05D000563 ORTHO05D003998 1.4e-11 72.8 34 91.2
MBI17_g11992_MAGBIO Magnolia biondii HOM05D000563 ORTHO05D006573 2.4e-11 72.0 37 83.8
PRCOL_00001823 Prasinoderma coloniale HOM05D000563 ORTHO05D006573 4.5e-10 67.8 38 81.6


User provided reference genes

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